Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30176.Seq
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)                   32   0.66 
SB_56399| Best HMM Match : DUF23 (HMM E-Value=1.9e-28)                 29   4.6  
SB_45633| Best HMM Match : DUF23 (HMM E-Value=3.2e-35)                 29   4.6  
SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_25008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
          Length = 1048

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 268  TGETYPIQNI--PIPLKFPAEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVR 441
            TG+ Y   N+  PI +++P+E    I GGE   K +   +     V H W+P       R
Sbjct: 930  TGQVYDSINLCRPIDVQWPSE-QMRIKGGEKFWKDWHPEEGMVGVVVHRWLPNHPDPARR 988

Query: 442  SEVLNTHLSVTVTDRTI 492
            S V  T L V + D  +
Sbjct: 989  SHVNRTILLVKIEDHYV 1005


>SB_56399| Best HMM Match : DUF23 (HMM E-Value=1.9e-28)
          Length = 419

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 399 YPASSIITLLETFNHSFSSPYPLIDFSGEFKRNRNILYRISFTSQFVAFH 250
           Y +  + ++L     ++   +  I + G+    ++ LYR   TS+FVAFH
Sbjct: 225 YESKGVASVLTWVMPAYMLDFYSIHYHGQMLSIQDCLYRARGTSRFVAFH 274


>SB_45633| Best HMM Match : DUF23 (HMM E-Value=3.2e-35)
          Length = 334

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 399 YPASSIITLLETFNHSFSSPYPLIDFSGEFKRNRNILYRISFTSQFVAFH 250
           Y +  + ++L     ++   +  I + G+    ++ LYR   TS+FVAFH
Sbjct: 140 YESKGVASVLTWVMPAYMLDFYSIHYHGQMLSIQDCLYRARGTSRFVAFH 189


>SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 2   IVTH*NSVNIFPQRFMLPKKL*SNSMASSRLQVTA 106
           I+T  N +N +P+R  L K +  NS+A+ R   T+
Sbjct: 304 IITPGNDLNSYPRRSRLKKPISRNSLATDRFSYTS 338


>SB_25008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 582 FSVSMLVQRLNHKQESSVDN-GQTHRIINETNSSIRYSY*EMSIENFRSYYSSLQY 418
           FS     Q+ N+ +E  VD  G   ++ N  N   R  + E  ++   +YYS+ +Y
Sbjct: 122 FSRENTFQQRNNNKEDIVDKIGNRKKLKNRANPRTRTHFTERQLKYLETYYSNGRY 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,723,923
Number of Sequences: 59808
Number of extensions: 444821
Number of successful extensions: 1012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)