Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30176.Seq
         (834 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-827|AAF52188.1|  302|Drosophila melanogaster CG3782-PA ...   113   4e-25
AY075494-1|AAL68304.1|  302|Drosophila melanogaster RE47667p pro...   106   3e-23
AY061303-1|AAL28851.1|  497|Drosophila melanogaster LD21615p pro...    31   2.6  
AE014298-541|AAF45883.1|  497|Drosophila melanogaster CG2875-PA,...    31   2.6  
AE014298-540|AAF45882.1|  496|Drosophila melanogaster CG2875-PB,...    31   2.6  

>AE014134-827|AAF52188.1|  302|Drosophila melanogaster CG3782-PA
           protein.
          Length = 302

 Score =  113 bits (271), Expect = 4e-25
 Identities = 51/103 (49%), Positives = 73/103 (70%)
 Frame = +1

Query: 208 TEASSCTFRSSRREVERDELTGETYPIQNIPIPLKFPAEINEGIWGGEAVVKGFQKRDDR 387
           T  ++  +    ++ ERDE+T    P+QNIP+PL    E + GIWGGEAV+KGFQKR+  
Sbjct: 43  TTPAAVHYIPKEQQWERDEVTHAIKPVQNIPLPLIDTPESHRGIWGGEAVIKGFQKREQT 102

Query: 388 RRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDPMG 516
           +RRVPH+WVP L+R+VV S VL+ ++SV VT+RT+  I++  G
Sbjct: 103 KRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTERTLEQIHECHG 145



 Score = 90.2 bits (214), Expect = 3e-18
 Identities = 39/68 (57%), Positives = 49/68 (72%)
 Frame = +3

Query: 510 YGFDHYLLKTPACDLVSVLALKLKKPILTELMNGCPRHAYDPKKQMGIYEEYQTYLSSYT 689
           +GFDHYLLK  ACDL S LALKLK+ +L  L NG P  A +P++Q  + +EY+ YL  YT
Sbjct: 144 HGFDHYLLKNRACDLRSALALKLKREVLQALQNGVPALADEPERQQEVLKEYRRYLEPYT 203

Query: 690 PEXIEWYG 713
           PE I+WYG
Sbjct: 204 PEEIDWYG 211



 Score = 68.9 bits (161), Expect = 8e-12
 Identities = 25/48 (52%), Positives = 38/48 (79%)
 Frame = +2

Query: 110 QLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGKW 253
           +L   +K+ GRF+ G+ ++LP AY+KFWREWK+  PAAVH++P+E +W
Sbjct: 10  KLLNGWKRPGRFDKGLGAQLPEAYRKFWREWKLTTPAAVHYIPKEQQW 57


>AY075494-1|AAL68304.1|  302|Drosophila melanogaster RE47667p
           protein.
          Length = 302

 Score =  106 bits (255), Expect = 3e-23
 Identities = 49/103 (47%), Positives = 72/103 (69%)
 Frame = +1

Query: 208 TEASSCTFRSSRREVERDELTGETYPIQNIPIPLKFPAEINEGIWGGEAVVKGFQKRDDR 387
           T  ++  +    ++ ERDE+T    P+QNIP+PL    E + G+ GGEAV+KGFQKR+  
Sbjct: 43  TTPAAVHYIPKEQQWERDEVTHAIKPVQNIPLPLIDTPESHRGMGGGEAVIKGFQKREQT 102

Query: 388 RRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDPMG 516
           +RRVPH+WVP L+R+VV S VL+ ++SV VT+RT+  I++  G
Sbjct: 103 KRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTERTLEQIHECHG 145



 Score = 90.2 bits (214), Expect = 3e-18
 Identities = 39/68 (57%), Positives = 49/68 (72%)
 Frame = +3

Query: 510 YGFDHYLLKTPACDLVSVLALKLKKPILTELMNGCPRHAYDPKKQMGIYEEYQTYLSSYT 689
           +GFDHYLLK  ACDL S LALKLK+ +L  L NG P  A +P++Q  + +EY+ YL  YT
Sbjct: 144 HGFDHYLLKNRACDLRSALALKLKREVLQALQNGVPALADEPERQQEVLKEYRRYLEPYT 203

Query: 690 PEXIEWYG 713
           PE I+WYG
Sbjct: 204 PEEIDWYG 211



 Score = 70.1 bits (164), Expect = 3e-12
 Identities = 34/80 (42%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
 Frame = +2

Query: 110 QLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGKW--NATN*LVKLI 283
           +L   +K+ GRF+ G+ ++LP AY+KFWREWK+  PAAVH++P+E +W  +     +K +
Sbjct: 10  KLLNGWKRPGRFDKGLGAQLPEAYRKFWREWKLTTPAAVHYIPKEQQWERDEVTHAIKPV 69

Query: 284 RYKIFLFLLNSPLKSMRGYG 343
           +  I L L+++P +S RG G
Sbjct: 70  Q-NIPLPLIDTP-ESHRGMG 87


>AY061303-1|AAL28851.1|  497|Drosophila melanogaster LD21615p
           protein.
          Length = 497

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 388 RRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDPMGLT 522
           R+R+ + W  ++ +     E L+  + V + +R I+ +NDP+ LT
Sbjct: 228 RKRLNNLWATIMAKGNEVDEKLHRQILVVLLERVINHLNDPIQLT 272


>AE014298-541|AAF45883.1|  497|Drosophila melanogaster CG2875-PA,
           isoform A protein.
          Length = 497

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 388 RRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDPMGLT 522
           R+R+ + W  ++ +     E L+  + V + +R I+ +NDP+ LT
Sbjct: 228 RKRLNNLWATIMAKGNEVDEKLHRQILVVLLERVINHLNDPIQLT 272


>AE014298-540|AAF45882.1|  496|Drosophila melanogaster CG2875-PB,
           isoform B protein.
          Length = 496

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 388 RRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDPMGLT 522
           R+R+ + W  ++ +     E L+  + V + +R I+ +NDP+ LT
Sbjct: 227 RKRLNNLWATIMAKGNEVDEKLHRQILVVLLERVINHLNDPIQLT 271


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,854,096
Number of Sequences: 53049
Number of extensions: 644464
Number of successful extensions: 1568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3962724636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)