Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30176.Seq
(834 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical ... 60 1e-09
Z47357-3|CAA87422.1| 360|Caenorhabditis elegans Hypothetical pr... 33 0.33
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 29 5.4
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 29 5.4
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 29 5.4
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 29 5.4
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 29 5.4
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 29 5.4
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 29 5.4
>AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical
protein T25D3.2 protein.
Length = 310
Score = 60.5 bits (140), Expect = 1e-09
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Frame = +1
Query: 226 TFRSSRREVERDELTGETYPIQNIPIPLKFPAEINEGIWGGEAVVKGFQKRDD--RRRRV 399
T R + + E+ E PI I P E ++G+WGGE VVKG+ + +++ +
Sbjct: 70 TSRFAHDSFKNVEIELEENPIIGIRTP-----EGDDGLWGGERVVKGWIESAPYTKKKIL 124
Query: 400 PHYWVP-----VLKRTVVRSEVLNTHLSVTVTDRTISLINDPMGL 519
P YWVP LK V+ SE+L+ ++ VTVT+R + LI++ GL
Sbjct: 125 PRYWVPKLFFPALKNVVLYSEILDKYIKVTVTERAMRLIDEHFGL 169
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 510 YGFDHYLLKTPACDLVSVLALKLKKPILTELMNGCPRHAYDPKKQMGIYEEYQTYLSSYT 689
+G D+Y+L++ DL S A LK+ +L L D KK I E+Y ++
Sbjct: 167 FGLDYYILESKEIDLDSKFANSLKREMLLTLTTESYYEENDEKKAY-IKEKYADFV---I 222
Query: 690 PE-XIEWYGADM 722
PE EW G ++
Sbjct: 223 PEREAEWIGLEL 234
>Z47357-3|CAA87422.1| 360|Caenorhabditis elegans Hypothetical
protein ZK1128.3 protein.
Length = 360
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = -1
Query: 534 SVDNGQTHRIINETNSSIRYSY*EMSIENFRSYYSSLQYWHPVVRYPASSIITLLETFNH 355
S++NG+ I+ S R S+ S+ENF+S+ YW+P + ++S + T+NH
Sbjct: 149 SMENGKISSILRVFPSKTR-SFEMESVENFQSHRMRRVYWNPSIPKDSNS---MFRTWNH 204
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Frame = +2
Query: 71 NSMASSRLQVTARQLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGK 250
N + R A L F+K E SEL + WK+ A F+ +
Sbjct: 318 NFLTEQRQLFYAGCLGDWFRKPSSIENQTLSELTDFSSCMFHLWKIEPRLAADFMNRNRY 377
Query: 251 WNATN*LVKLIRYKIFLFLLNS---PLKSMRGYGEEKLWLKVSKSVMID 388
+ + KL Y+ F+ + S P + R G EK W + + ID
Sbjct: 378 LDPLPIVEKLKIYRNFVIMRQSVEEPYLTWRHGGLEKRWFVMPNNTYID 426
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Frame = +2
Query: 71 NSMASSRLQVTARQLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGK 250
N + R A L F+K E SEL + WK+ A F+ +
Sbjct: 322 NFLTEQRQLFYAGCLGDWFRKPSSIENQTLSELTDFSSCMFHLWKIEPRLAADFMNRNRY 381
Query: 251 WNATN*LVKLIRYKIFLFLLNS---PLKSMRGYGEEKLWLKVSKSVMID 388
+ + KL Y+ F+ + S P + R G EK W + + ID
Sbjct: 382 LDPLPIVEKLKIYRNFVIMRQSVEEPYLTWRHGGLEKRWFVMPNNTYID 430
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Frame = +2
Query: 71 NSMASSRLQVTARQLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGK 250
N + R A L F+K E SEL + WK+ A F+ +
Sbjct: 317 NFLTEQRQLFYAGCLGDWFRKPSSIENQTLSELTDFSSCMFHLWKIEPRLAADFMNRNRY 376
Query: 251 WNATN*LVKLIRYKIFLFLLNS---PLKSMRGYGEEKLWLKVSKSVMID 388
+ + KL Y+ F+ + S P + R G EK W + + ID
Sbjct: 377 LDPLPIVEKLKIYRNFVIMRQSVEEPYLTWRHGGLEKRWFVMPNNTYID 425
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Frame = +2
Query: 71 NSMASSRLQVTARQLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGK 250
N + R A L F+K E SEL + WK+ A F+ +
Sbjct: 224 NFLTEQRQLFYAGCLGDWFRKPSSIENQTLSELTDFSSCMFHLWKIEPRLAADFMNRNRY 283
Query: 251 WNATN*LVKLIRYKIFLFLLNS---PLKSMRGYGEEKLWLKVSKSVMID 388
+ + KL Y+ F+ + S P + R G EK W + + ID
Sbjct: 284 LDPLPIVEKLKIYRNFVIMRQSVEEPYLTWRHGGLEKRWFVMPNNTYID 332
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Frame = +2
Query: 71 NSMASSRLQVTARQLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGK 250
N + R A L F+K E SEL + WK+ A F+ +
Sbjct: 275 NFLTEQRQLFYAGCLGDWFRKPSSIENQTLSELTDFSSCMFHLWKIEPRLAADFMNRNRY 334
Query: 251 WNATN*LVKLIRYKIFLFLLNS---PLKSMRGYGEEKLWLKVSKSVMID 388
+ + KL Y+ F+ + S P + R G EK W + + ID
Sbjct: 335 LDPLPIVEKLKIYRNFVIMRQSVEEPYLTWRHGGLEKRWFVMPNNTYID 383
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Frame = +2
Query: 71 NSMASSRLQVTARQLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGK 250
N + R A L F+K E SEL + WK+ A F+ +
Sbjct: 357 NFLTEQRQLFYAGCLGDWFRKPSSIENQTLSELTDFSSCMFHLWKIEPRLAADFMNRNRY 416
Query: 251 WNATN*LVKLIRYKIFLFLLNS---PLKSMRGYGEEKLWLKVSKSVMID 388
+ + KL Y+ F+ + S P + R G EK W + + ID
Sbjct: 417 LDPLPIVEKLKIYRNFVIMRQSVEEPYLTWRHGGLEKRWFVMPNNTYID 465
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Frame = +2
Query: 71 NSMASSRLQVTARQLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGK 250
N + R A L F+K E SEL + WK+ A F+ +
Sbjct: 431 NFLTEQRQLFYAGCLGDWFRKPSSIENQTLSELTDFSSCMFHLWKIEPRLAADFMNRNRY 490
Query: 251 WNATN*LVKLIRYKIFLFLLNS---PLKSMRGYGEEKLWLKVSKSVMID 388
+ + KL Y+ F+ + S P + R G EK W + + ID
Sbjct: 491 LDPLPIVEKLKIYRNFVIMRQSVEEPYLTWRHGGLEKRWFVMPNNTYID 539
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,184
Number of Sequences: 27780
Number of extensions: 346958
Number of successful extensions: 847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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