Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30175.Seq
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015... 94 1e-19
12_02_0452 - 19188601-19188726,19189364-19189417,19189493-191896... 62 8e-10
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 33 0.30
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 32 0.70
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 32 0.70
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 31 0.92
12_01_0090 + 717524-719080 30 2.1
03_06_0069 - 31449319-31450368 30 2.1
03_05_0929 - 28898627-28898728,28898826-28898906,28899419-288995... 29 4.9
04_04_0702 + 27383876-27384862 29 6.5
05_03_0459 - 14284513-14286336 28 8.6
02_02_0109 + 6830802-6833412,6833491-6833861 28 8.6
>11_06_0457 -
23800451-23800576,23801259-23801312,23801390-23801539,
23801919-23802012,23802460-23802567,23802661-23802793,
23802903-23803139,23803488-23803586,23804968-23804983
Length = 338
Score = 94.3 bits (224), Expect = 1e-19
Identities = 45/83 (54%), Positives = 57/83 (68%)
Frame = +1
Query: 256 ELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDI 435
E + AD VCFDVDSTV DEGIDELA FCG G V TA+AM G + F+EAL RL +
Sbjct: 121 ETWCNADAVCFDVDSTVCLDEGIDELADFCGAGKAVAEWTAKAMTGTVPFEEALAARLSL 180
Query: 436 IRPNVGQIREFIEKFPVRLTPGI 504
I+P + Q+ + + K P R++PGI
Sbjct: 181 IKPYLSQVDDCLVKRPPRISPGI 203
Score = 58.0 bits (134), Expect = 9e-09
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFNGXYAG 665
L+K+L V+LVSGGFR +I+PVA L IP NI AN+L F +G YAG
Sbjct: 206 LIKKLKANNTDVFLVSGGFRQMIKPVASELGIPPENIIANQLLFGTSGEYAG 257
>12_02_0452 -
19188601-19188726,19189364-19189417,19189493-19189642,
19189994-19190087,19190607-19190710
Length = 175
Score = 61.7 bits (143), Expect = 8e-10
Identities = 31/52 (59%), Positives = 37/52 (71%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFNGXYAG 665
LVK L + V VYLVSGGFR +I+PVA +L IP NIFAN+L F +G Y G
Sbjct: 43 LVKMLKAKNVDVYLVSGGFRQMIKPVAMQLGIPPENIFANQLLFGTSGEYVG 94
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/40 (42%), Positives = 30/40 (75%)
Frame = +1
Query: 385 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGI 504
M G++ F++AL RL + +P++GQ+ + +EK P R++PGI
Sbjct: 1 MTGSVPFEKALAARLSLFKPSLGQVEDCMEKRPPRISPGI 40
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = -1
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPV 213
PPI+S++SL+ S+P P + P +TV + S + S+ ++S S ++ S PV
Sbjct: 4 PPISSSLSLMASNPIPS--PPVAKPGRPLTVAACSNSSSSS-SSSSPSSTSCSAAWSLPV 60
Query: 212 RASSTSR 192
S+ R
Sbjct: 61 ATSAGRR 67
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 31.9 bits (69), Expect = 0.70
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 401 VILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA-VLNNS 255
V+ PP +S + + SSP +N + SMPSS T ES S T +A VL+ S
Sbjct: 486 VLAPPSSS--NAVESSPKIENSGTKSMPSSQHTSESDSATTSAAQVLDKS 533
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 31.9 bits (69), Expect = 0.70
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = -1
Query: 434 MSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNS 255
+SS F S L ++S +L +PF ++A S+ PSS T ST QT S S
Sbjct: 182 ISSNNFSGSLPPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPT-GSTPTQTPS-----S 235
Query: 254 GQSVGATSR*STPVRAS--STSRTAGCFSNCKEPS 156
S G S S+P +S ST+R + S+ K S
Sbjct: 236 PSSSGTPSPSSSPSNSSGGSTARDSSSPSSRKHKS 270
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 31.5 bits (68), Expect = 0.92
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +2
Query: 410 KP*RRDWTSSGLTSVRSENSLRNFQLD*LLVLQVSERVTRKRSHRISSFGRIQESXRTGR 589
KP DW +G + S S+RN ++ E++ + IS++G E TGR
Sbjct: 237 KPIPGDWNGAGAHTNYSTKSMRN-DGGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGR 295
Query: 590 GETKHPNYQHLR*STQVLFQWGI--RWASMKTSPHSXSGGQ 706
ET N F WG+ R AS++ + G+
Sbjct: 296 HETADIN----------TFSWGVANRGASVRVGRETEQNGK 326
>12_01_0090 + 717524-719080
Length = 518
Score = 30.3 bits (65), Expect = 2.1
Identities = 28/79 (35%), Positives = 41/79 (51%)
Frame = -1
Query: 500 PGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSM 321
P S G +++L+ LGL+ S F A + LPP SA+SLL +P P L S S+
Sbjct: 13 PRRSAAGGHQLHALL-AKLGLLHRSEFLSALLSR-LPPSPSALSLLLEAP-PAVL-SPSL 68
Query: 320 PSSCMTVESTSKQTQSAVL 264
+ S+S+ SA+L
Sbjct: 69 VCPVIVAFSSSQAPSSALL 87
>03_06_0069 - 31449319-31450368
Length = 349
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -1
Query: 365 LTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRA--SSTSR 192
+ S+P P SSS SS + ++T +++ SA + GQ G + P+R ++S
Sbjct: 22 IVSNPSP---TSSSSTSSRSSAQATQQRSSSATSSPHGQGQGGGAAEQAPLRCPRCNSSN 78
Query: 191 TAGCFSN 171
T C+ N
Sbjct: 79 TKFCYYN 85
>03_05_0929 -
28898627-28898728,28898826-28898906,28899419-28899523,
28899598-28899670,28900235-28900287,28900987-28901307
Length = 244
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 211 LTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGID 327
+TGV +VAP F C CF+ + T++ E ID
Sbjct: 172 ITGVSTYNVAPMKAAIYFNKIQCFCFE-EQTLLPGEQID 209
>04_04_0702 + 27383876-27384862
Length = 328
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -1
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPV 213
PP SA + T+ Q + V S + +T++ N+S S TSR +TP
Sbjct: 213 PPAHSAAASTTNKRKRQPSEDPDDGVEVIGVVSKAVKTEAPTSNSSSLSSSLTSRDTTPA 272
Query: 212 RASSTSRTAG 183
+S+ + AG
Sbjct: 273 TSSAGAEHAG 282
>05_03_0459 - 14284513-14286336
Length = 607
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = -1
Query: 386 IASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRA 207
I VS ++ + FP + SSS S + S+S + S+ ++SG S G++S + +
Sbjct: 250 IYGGVSPVSVNNFPDSPRSSSSRSDSSSSSSSSNGSGSSSSSSSGASSGSSSCAGSSSSS 309
Query: 206 SSTSRTAGCFSNCKEP 159
S + A S P
Sbjct: 310 SGSDTDADADSASNRP 325
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 525 HERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRL 635
H++ +YL + GF IEP LN+ I++ +N L
Sbjct: 266 HKKLQNLYLYANGFTGEIEPNVSALNLVEIDVSSNEL 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,675,632
Number of Sequences: 37544
Number of extensions: 453415
Number of successful extensions: 1118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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