Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30175.Seq
(878 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 106 2e-23
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 106 2e-23
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 30 1.8
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 30 1.8
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 29 3.1
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ... 29 4.1
At5g25265.1 68418.m02995 expressed protein 29 5.4
At3g08670.1 68416.m01007 expressed protein 29 5.4
At5g58410.1 68418.m07314 expressed protein contains similarity t... 28 7.2
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat... 28 7.2
At4g19240.1 68417.m02838 expressed protein 28 7.2
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put... 28 7.2
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 28 7.2
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 28 7.2
At1g27960.1 68414.m03425 expressed protein contains Pfam profile... 28 7.2
At3g05370.1 68416.m00586 disease resistance family protein conta... 28 9.5
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 106 bits (254), Expect = 2e-23
Identities = 61/167 (36%), Positives = 84/167 (50%)
Frame = +1
Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
+V+ E + G + V + +L+R+ + VCFDVDSTV DEGIDELA+FCG G V
Sbjct: 55 SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114
Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITG**KSYTKEESSY 546
TA AMGG++ F+EAL RL + +P++ ++ E+++K P RL+PGI K
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDV 174
Query: 547 I*FRADSGVX*NRXXXXXXXXXXXXXXXXXXXXXMGXTLGFDENEPT 687
N G LGFDENEPT
Sbjct: 175 YLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPT 221
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFNGXYAG 665
LVK+L + VYL+SGGFR +I PVA L IP NIFAN L F +G + G
Sbjct: 163 LVKKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLG 214
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 106 bits (254), Expect = 2e-23
Identities = 61/167 (36%), Positives = 84/167 (50%)
Frame = +1
Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
+V+ E + G + V + +L+R+ + VCFDVDSTV DEGIDELA+FCG G V
Sbjct: 55 SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114
Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITG**KSYTKEESSY 546
TA AMGG++ F+EAL RL + +P++ ++ E+++K P RL+PGI K
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDV 174
Query: 547 I*FRADSGVX*NRXXXXXXXXXXXXXXXXXXXXXMGXTLGFDENEPT 687
N G LGFDENEPT
Sbjct: 175 YLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPT 221
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFNGXYAG 665
LVK+L + VYL+SGGFR +I PVA L IP NIFAN L F +G + G
Sbjct: 163 LVKKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLG 214
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 389 PIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQ 249
P S+ S ++SP P N SS SS STS A+L + G+
Sbjct: 80 PCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAILRSDGE 126
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 270
PP LL+S P P S+PS M V S+S SA
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSA 239
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -1
Query: 359 SSPFPQNLASSSMPSSCMTVESTSKQ--TQSAVLNNSGQSVGATSR*STPVRASSTSRTA 186
S P + + PS TV +T+ + S++ N+ Q +G++ STP S+ +
Sbjct: 444 SQPTTPSFGQPTTPSFRSTVSNTTSVFGSSSSLTTNTSQPLGSSIFGSTPAHGSTPGFSI 503
Query: 185 GCFSN 171
G F+N
Sbjct: 504 GGFNN 508
>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
mRNA binding protein precursor (GI:26453355)
[Lycopersicon esculentum]
Length = 406
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = -1
Query: 440 LMMSSLFFKASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVES--TSKQ 282
L SSLFF + N+++PP SL +SS +L+SSS SS + S TS++
Sbjct: 4 LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRTSRR 63
Query: 281 TQSAVLNNSGQSVG 240
SVG
Sbjct: 64 LSPQKFTVKASSVG 77
>At5g25265.1 68418.m02995 expressed protein
Length = 366
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 231 TLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 100
T + S+SV+N CR+++ + I ++ P +E M FT IL
Sbjct: 72 TAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSE--MGGFTRIL 113
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 28.7 bits (61), Expect = 5.4
Identities = 31/102 (30%), Positives = 45/102 (44%)
Frame = -1
Query: 500 PGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSM 321
PG L GN S +SL P + S+ AS L S +S P + +
Sbjct: 105 PGTPL-GNDSHSSLAAPKIA--SSARASSASKASRLSVSQSESGYHSSRPARSSSVTRPS 161
Query: 320 PSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTS 195
S+ TS ++ S++LN S SV + R S+P SS+S
Sbjct: 162 ISTSQYSSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSS 203
>At5g58410.1 68418.m07314 expressed protein contains similarity to
hypothetical proteins
Length = 1873
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 119 IIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVMSPQQTVRS 259
+I+V+ E + + +SLKS Q ATL T L SI ++ + + S
Sbjct: 831 VIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFIIDLENRMTS 877
>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -1
Query: 506 VIPGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASS 327
V+ G LT L T+ + +L++ +N++ PIA+ V L P + +
Sbjct: 839 VLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNIVRIPIAAGVLL----PLTGTMLTP 894
Query: 326 SMPSSCMTVESTSKQTQSAVL 264
SM + M V S T S +L
Sbjct: 895 SMAGALMGVSSLGVMTNSLLL 915
>At4g19240.1 68417.m02838 expressed protein
Length = 366
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 722 VSPLTFGHQIXNVGSFSSKPSVXPIEIKLESISEDVDSWDV 600
V+PL H I + S PSV P +K + +++ W V
Sbjct: 76 VTPLVPSHWISLMAGDSLGPSVVPFPVKTSTTHDELHCWQV 116
>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 883
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 425 LFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVEST 291
L K + N LPP+ +A+ + T FPQ+ + S+ ++ T
Sbjct: 333 LELKRTQNSTLPPLLTAIEVFTVIDFPQSKTNEDDVSAIKNIKDT 377
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 527 RKRSHRISSFGRIQESXRTGRGETKHPN-YQ 616
RK + I+SFGR + S GRG+T P+ YQ
Sbjct: 85 RKANCNIASFGRPRPSPPRGRGQTGSPSQYQ 115
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 527 RKRSHRISSFGRIQESXRTGRGETKHPN-YQ 616
RK + I+SFGR + S GRG+T P+ YQ
Sbjct: 85 RKANCNIASFGRPRPSPPRGRGQTGSPSQYQ 115
>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 539
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 253 PELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 396
P T + D +V+QD+ I FCG+G E + A+ N
Sbjct: 12 PPTTTTGSFTGLNTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59
>At3g05370.1 68416.m00586 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2 disease resistance
protein GB:AAC15780 from [Lycopersicon pimpinellifolium]
Length = 860
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +1
Query: 211 LTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMG 390
LTG D D ++ P + + + F VDS I ++G++ K + ++V +
Sbjct: 622 LTGEDG-DFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFS 680
Query: 391 GNMTFQEALKKRL 429
GN+ L K L
Sbjct: 681 GNIPESIGLLKEL 693
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,874,678
Number of Sequences: 28952
Number of extensions: 353250
Number of successful extensions: 1002
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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