Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30174.Seq
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0561 + 4122751-4123140,4124226-4124484,4124639-4124985           30   2.0  
01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052     28   8.2  

>01_01_0561 + 4122751-4123140,4124226-4124484,4124639-4124985
          Length = 331

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/94 (23%), Positives = 38/94 (40%)
 Frame = +3

Query: 255 NAVIQKADVYDSDSNHSLIESNKSKTSYVVTEKSLPNADVYESDSSHSENVKEKPAKINX 434
           +AV+ +  +    SN +  E+N  K     T      A      S   +N K K AK + 
Sbjct: 195 DAVLAELGISGGSSNAAQDENNAEKKGSNQTGDGDAPAPSESKSSKKKKNKKAKEAKESQ 254

Query: 435 XXXXXXXXXXXEKPLEETENIDVTESIARRXSVR 536
                       +P E+T ++DV E + +  S++
Sbjct: 255 EPADGTEETASAEPDEDTTSVDVKERLKKMASMK 288


>01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052
          Length = 492

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 692 DMPWXGNATSP*SSETLSPVTLAHNY 615
           ++P  G AT P SS+  S VTL+H Y
Sbjct: 56  ELPACGAATIPSSSDGTSSVTLSHRY 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,975
Number of Sequences: 37544
Number of extensions: 278597
Number of successful extensions: 471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)