Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30174.Seq
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    32   0.60 
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical pr...    29   5.5  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -1

Query: 610 SQMAICNWHIFIIYSQINDIYW--DYGLTDXLRAIDSVTSMFS 488
           +Q A CN ++F I +Q+N++ W  DY  T+    ID+V ++ S
Sbjct: 54  TQTAQCNTNLFSISTQVNNLKWNDDYNNTNSPAYIDAVKNITS 96


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 252 NNAVIQKADVYDSDSNHSLIESNKSKTSYVVTEKSLPNADVYESDSSHSENVKEKPAK 425
           NN+  +K D+  +    SL   +  +  +  TEKS P  D+ ++           PA+
Sbjct: 349 NNSDAEKEDIKGTRKRSSLENQHSERMQFSQTEKSSPIGDMVQNSPDFKNMANRTPAE 406


>U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical
           protein F32E10.6 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 312 ESNKSKTSYVVTEKSLPNADVYESDSSHSENVKEKPAK 425
           +SNK K S    +KS  + D   SD    E VKEK  K
Sbjct: 178 KSNKKKGSKKSPKKSAKSKDDDSSDEEEEEEVKEKSPK 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,307
Number of Sequences: 27780
Number of extensions: 256598
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)