Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30173.Seq
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0258 - 11153709-11156090                                         31   1.2  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.2  
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     29   3.8  

>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 239 NINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 105
           N+N YNL F +  +   + R      +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 53  ITIHWPSFYNVV-TGKTLALPNLIALQH 133
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 594 SARSFRFLPFLSRHVRRLSPSSSKSGAPLGFR 499
           SA   R+ PFLSR  +R S  S+ SG P   R
Sbjct: 193 SATDGRYAPFLSRQPQRSSAGSTHSGKPRASR 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,662,428
Number of Sequences: 37544
Number of extensions: 481808
Number of successful extensions: 1016
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)