Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30172.Seq
         (507 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   4.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.3  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.3  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 493 YFIVISCKFCVTLSLEV 443
           Y+I IS  F + +SLE+
Sbjct: 6   YYITISMAFIIFVSLEI 22


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 192 APPNEKPEIVKTHLRXM 242
           A PN KP+  + HLR +
Sbjct: 134 ASPNRKPDDNQDHLRRL 150


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 139 LNVNQWHW 162
           LN++ WHW
Sbjct: 203 LNLHHWHW 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,492
Number of Sequences: 336
Number of extensions: 1881
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)