Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30171.Seq
         (763 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071539-1|AAL49161.1|  124|Drosophila melanogaster RE57810p pro...    60   2e-09
AE014296-3496|AAF51690.1|  124|Drosophila melanogaster CG12975-P...    60   2e-09

>AY071539-1|AAL49161.1|  124|Drosophila melanogaster RE57810p
           protein.
          Length = 124

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 28/83 (33%), Positives = 41/83 (49%)
 Frame = +2

Query: 260 GYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLENKYDENE 439
           G+PL +     +V E +FNP F+ R++PKLDW  ++ AA     ++ +P        ENE
Sbjct: 20  GFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQVAELTEDIPAVQPENIVENE 79

Query: 440 EFLKKAHKXXXXXXXXXGHLTCP 508
             L+K H          G L CP
Sbjct: 80  LLLQKLHHLLFEIDVLEGQLECP 102



 Score = 39.9 bits (89), Expect = 0.004
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 496 LDLSKSGRQFPISKGIPNMLLNEAEV 573
           L+  ++GR FPIS GIPNMLLNE EV
Sbjct: 99  LECPETGRVFPISDGIPNMLLNEDEV 124


>AE014296-3496|AAF51690.1|  124|Drosophila melanogaster CG12975-PA
           protein.
          Length = 124

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 28/83 (33%), Positives = 41/83 (49%)
 Frame = +2

Query: 260 GYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLENKYDENE 439
           G+PL +     +V E +FNP F+ R++PKLDW  ++ AA     ++ +P        ENE
Sbjct: 20  GFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQVAELTEDIPAVQPENIVENE 79

Query: 440 EFLKKAHKXXXXXXXXXGHLTCP 508
             L+K H          G L CP
Sbjct: 80  LLLQKLHHLLFEIDVLEGQLECP 102



 Score = 39.9 bits (89), Expect = 0.004
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 496 LDLSKSGRQFPISKGIPNMLLNEAEV 573
           L+  ++GR FPIS GIPNMLLNE EV
Sbjct: 99  LECPETGRVFPISDGIPNMLLNEDEV 124


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,060,881
Number of Sequences: 53049
Number of extensions: 588225
Number of successful extensions: 1387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)