Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30168.Seq
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   5.8  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    26   7.7  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 420 NCSELHIKRSV*CLLSILNLSFVGIENFHF 509
           NC+ +H+KR+    L  +N SF+  E  ++
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNY 337


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -2

Query: 654 PAHQFNKSQMSALHNQLQNHMILHLIA*CVQKSKIHYIIMSNSLPLCKKSGNSQFPQNSN 475
           PAH+  K  +S  +   QN+++ +  +  V++    Y I  +++   K+   ++FP+  N
Sbjct: 312 PAHEIRKQLLSCTNQTNQNNVVKNSASVLVRQIMGDYNITESAVDGAKQM-PTEFPKPEN 370

Query: 474 L 472
           L
Sbjct: 371 L 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,030
Number of Sequences: 5004
Number of extensions: 63041
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)