Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30167.Seq
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    44   3e-05
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.29 
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   4.8  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   8.4  

>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +2

Query: 263 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLENKYDENEE 442
           +PL +    + +++++  PEF+  ++P++DW  L      +G+   LP    +  D+++E
Sbjct: 23  FPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQLGNY-SLPDEKPDLVDDSDE 81

Query: 443 -FLKKAHKXXXXXXXXXGHLTCPNLXDNFRFLKG 541
             LK  H          G + C N    +   +G
Sbjct: 82  VLLKSLHNVLLETEITEGKMVCGNCGHVYPIFEG 115



 Score = 29.5 bits (63), Expect = 0.68
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 514 GRQFPISKGIPNMXLNEAEV 573
           G  +PI +GIPNM L+E+E+
Sbjct: 107 GHVYPIFEGIPNMLLSESEI 126


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 311 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSL 415
           F  +FI  V+ +++WE+L +     G  +GL R+L
Sbjct: 100 FQEQFIENVVKEINWEILAILISLSGIENGLVRNL 134


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -3

Query: 515 PDLDKSSXPLQ---LPPLTRLYELSSKTLRFHHTYFLKILADHHCGRCYQRPPIILPNPA 345
           P+LDK    L    +  L RL    S + R  +T  +  +A HHC    +   ++     
Sbjct: 192 PELDKLRHSLYNWWVSILRRLQSNISTSERITYTKAILAIAKHHCWNKVEHSALLYLEHQ 251

Query: 344 LVLHD 330
           L+L+D
Sbjct: 252 LILYD 256


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 311 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLP 406
           F+PE  +  +  LDW   W  A S G    LP
Sbjct: 577 FSPEVRNGFLKTLDWLSQWACARSYGLGTRLP 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,829
Number of Sequences: 5004
Number of extensions: 51715
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)