Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30165.Seq
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1057 + 27248249-27249001 104 8e-23
02_01_0529 - 3846489-3847268 103 3e-22
03_02_0380 - 7945959-7946699 100 3e-21
09_04_0535 + 18397051-18397644 91 8e-19
08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150 91 1e-18
08_02_1128 + 24510735-24511055 60 2e-09
01_01_0018 + 139150-140415 55 7e-08
01_05_0464 - 22470963-22472291 55 9e-08
04_04_1632 - 34926955-34927332 54 2e-07
05_03_0410 + 13616708-13617691 52 6e-07
10_02_0162 + 6054823-6055830 51 1e-06
01_03_0204 + 13771346-13772680 51 1e-06
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 44 1e-04
05_05_0328 + 24130887-24130919,24132207-24132279,24133542-241336... 44 2e-04
01_01_0592 + 4414416-4415132 44 2e-04
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 31 0.94
06_01_0582 + 4172154-4173614 29 3.8
01_03_0040 + 11888291-11888419,11888525-11888662,11888913-118890... 28 8.8
>06_03_1057 + 27248249-27249001
Length = 250
Score = 104 bits (250), Expect = 8e-23
Identities = 52/74 (70%), Positives = 60/74 (81%)
Frame = +1
Query: 295 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 474
LQQFW + L DI++ DFK +LPLARIKKIMK DE+V+MISAEAPV+FAKA EIFI
Sbjct: 80 LQQFWAERLVDIEQTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFIL 137
Query: 475 ELTLRAWSHTEEIK 516
ELTLR+W HTEE K
Sbjct: 138 ELTLRSWMHTEENK 151
Score = 31.5 bits (68), Expect = 0.94
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
+I ++D +DFL+DIVPR ++K
Sbjct: 163 AITRTDMYDFLVDIVPRDDLK 183
>02_01_0529 - 3846489-3847268
Length = 259
Score = 103 bits (246), Expect = 3e-22
Identities = 49/76 (64%), Positives = 61/76 (80%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q L++FW +E+I++ DFK +LPLARIKKIMK DE+V+MISAEAPV+FAKA E+F
Sbjct: 82 QQLREFWANQMEEIEQTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVF 139
Query: 469 IHELTLRAWSHTEEIK 516
I ELTLR+W HTEE K
Sbjct: 140 ILELTLRSWMHTEENK 155
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
+I ++D +DFL+DIVPR E+K
Sbjct: 167 AITRTDIYDFLVDIVPRDEMK 187
>03_02_0380 - 7945959-7946699
Length = 246
Score = 99.5 bits (237), Expect = 3e-21
Identities = 46/74 (62%), Positives = 57/74 (77%)
Frame = +1
Query: 295 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 474
LQ FW ++ ++ ++ DFK LPLARIKKIMK DE+V+MISAEAPVLFAKA E+FI
Sbjct: 46 LQAFWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFIL 105
Query: 475 ELTLRAWSHTEEIK 516
ELT+R+W H EE K
Sbjct: 106 ELTIRSWLHAEENK 119
Score = 33.1 bits (72), Expect = 0.31
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
+I ++D FDFL+DIVPR E K
Sbjct: 131 AIARTDVFDFLVDIVPREEAK 151
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 441 LIREGC*DFYTRANVASLVAYGGNKRRTLQRNDIA 545
L + C F + S + NKRRTLQRND+A
Sbjct: 95 LFAKACELFILELTIRSWLHAEENKRRTLQRNDVA 129
>09_04_0535 + 18397051-18397644
Length = 197
Score = 91.5 bits (217), Expect = 8e-19
Identities = 45/76 (59%), Positives = 55/76 (72%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q LQ FW + +I+ DFK LPLARIKKIMK DE+V+MI+AEAPV+FA+A E+F
Sbjct: 58 QQLQMFWAEQYREIEATT--DFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMF 115
Query: 469 IHELTLRAWSHTEEIK 516
I ELT R W+H EE K
Sbjct: 116 ILELTHRGWAHAEENK 131
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
+I +++ FDFL+DIVPR + K
Sbjct: 143 AIARTEVFDFLVDIVPRDDAK 163
>08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150
Length = 276
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
+ LQ FW + +++++ +FK LPLARIKKIMK DE+VKMI+ EAP LFAKA E+F
Sbjct: 104 EQLQAFWADQMAEVEQMT--EFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMF 161
Query: 469 IHELTLRAWSHTEE 510
I ++TLR+W HTEE
Sbjct: 162 ILDMTLRSWQHTEE 175
>08_02_1128 + 24510735-24511055
Length = 106
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +1
Query: 394 MKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEEIK 516
MK DE+V+MI+AEAPV+FA+A E+FI ELT R W+H EE K
Sbjct: 1 MKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENK 41
Score = 31.5 bits (68), Expect = 0.94
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVKPTKPRYDAAXKAP 649
+I +++ FDFL+DIVPR E K + A P
Sbjct: 53 AIARTEVFDFLVDIVPRDEAKDAEAAAAVAAGIP 86
>01_01_0018 + 139150-140415
Length = 421
Score = 55.2 bits (127), Expect = 7e-08
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q + +FW ++I+ ++DF A+P+AR+KKI + M+S + P +K E+F
Sbjct: 20 QQMDEFWRDRQKEIE--TTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELF 77
Query: 469 IHELTLRAWSHTE 507
+ EL +RAW+ +
Sbjct: 78 VQELAVRAWASAQ 90
>01_05_0464 - 22470963-22472291
Length = 442
Score = 54.8 bits (126), Expect = 9e-08
Identities = 23/73 (31%), Positives = 44/73 (60%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q + +FW ++I+ ++DF A+P+AR+KKI+ + M++ + P +K E+F
Sbjct: 20 QQMDEFWRDRQKEIE--TTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELF 77
Query: 469 IHELTLRAWSHTE 507
+ EL +RAW+ +
Sbjct: 78 VQELAVRAWASAQ 90
>04_04_1632 - 34926955-34927332
Length = 125
Score = 54.0 bits (124), Expect = 2e-07
Identities = 36/65 (55%), Positives = 41/65 (63%), Gaps = 14/65 (21%)
Frame = +1
Query: 364 ALPLARIKKIMKL---DEEV-----------KMISAEAPVLFAKAAEIFIHELTLRAWSH 501
ALPLARIKKIMK D V +MIS EAPV+F+KA E+FI ELT RAW+
Sbjct: 23 ALPLARIKKIMKRSAGDSSVVDGGGGGGGGARMISGEAPVVFSKACELFIAELTRRAWAA 82
Query: 502 TEEIK 516
T E K
Sbjct: 83 TLEGK 87
>05_03_0410 + 13616708-13617691
Length = 327
Score = 52.0 bits (119), Expect = 6e-07
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Frame = +1
Query: 295 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 474
+++FW + E I+ S LP+ +K +++ + M+SA+ P K E+F+
Sbjct: 31 MEEFWRRSQEQIEA--SAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQ 88
Query: 475 ELTLRAW----SHTEEIKGGLCSA---TT*RQYIEIGSVRFPDRHSAAA*SQAD-ETALR 630
ELTLRAW SH +I G A TT Y +G+V H A + D +T+ R
Sbjct: 89 ELTLRAWVCANSHNRDIILGTDIAEAITTTESYHFLGNVL--RSHKALGSTAPDIDTSAR 146
Query: 631 RRXESPQHGSVLPP 672
+ + Q S+ P
Sbjct: 147 KHIKLDQMTSLYHP 160
>10_02_0162 + 6054823-6055830
Length = 335
Score = 51.2 bits (117), Expect = 1e-06
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +1
Query: 295 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 474
+++FW E I++ S + LP++R+K I+ E M+SA+ P K E+F+
Sbjct: 31 MEKFWRMSQEQIEE--SAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQ 88
Query: 475 ELTLRAW----SHTEEI 513
EL LRAW SH EI
Sbjct: 89 ELILRAWVCANSHNREI 105
>01_03_0204 + 13771346-13772680
Length = 444
Score = 51.2 bits (117), Expect = 1e-06
Identities = 22/70 (31%), Positives = 41/70 (58%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q + +FW ++I+ ++DF +P+AR+KKI+ + M++ + P +K E+F
Sbjct: 20 QQMDEFWRDRQKEIEM--TKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELF 77
Query: 469 IHELTLRAWS 498
+ EL RAW+
Sbjct: 78 VQELAARAWA 87
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +1
Query: 370 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHT 504
P ARIKKIM+ DE+V I+ PVL ++A E+F+ +L R + T
Sbjct: 10 PAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEIT 54
>05_05_0328 +
24130887-24130919,24132207-24132279,24133542-24133635,
24133924-24134037,24134121-24134169,24134364-24134873
Length = 290
Score = 44.0 bits (99), Expect = 2e-04
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +1
Query: 370 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHT 504
P RIKKIM+ DE+V I+ PVL +KA E+F+ +L R + T
Sbjct: 10 PAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDIT 54
>01_01_0592 + 4414416-4415132
Length = 238
Score = 44.0 bits (99), Expect = 2e-04
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Frame = +1
Query: 310 DKVLEDIQKVNSE----DFKTQ--ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFI 471
D+ E +++V E D Q ALPL R+K+I+++D ++K ++ EA +L A A E+F+
Sbjct: 94 DEATEPMEQVEGEGEDGDAAAQRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFV 153
Query: 472 HELTLRA 492
L A
Sbjct: 154 GSLAAGA 160
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 349 DFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFI 471
D + P+AR+++IM+ ++ S EA L KA EIF+
Sbjct: 200 DHGAGSFPMARVRQIMRAEDATIRPSNEAVFLINKATEIFL 240
>06_01_0582 + 4172154-4173614
Length = 486
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 311 SQNCWRVCAPPQRRTPHRQISVHFFGRGNRRCL 213
+Q CW+V +P RR R +S H RRCL
Sbjct: 430 AQRCWKVPSPVLRRVLRRTVSEHVV-PAYRRCL 461
>01_03_0040 +
11888291-11888419,11888525-11888662,11888913-11889011,
11889171-11889557
Length = 250
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 584 DIVPRHEVKPTKPRYDAAXKAPS 652
D++PR ++ PTK DAA K P+
Sbjct: 63 DVIPRWKIVPTKDVIDAAFKDPA 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,694,236
Number of Sequences: 37544
Number of extensions: 423030
Number of successful extensions: 1241
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -