Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30165.Seq
(897 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08970.4 68414.m01000 CCAAT-box binding transcription factor ... 104 7e-23
At1g08970.3 68414.m00999 CCAAT-box binding transcription factor ... 104 7e-23
At1g08970.2 68414.m00998 CCAAT-box binding transcription factor ... 104 7e-23
At1g08970.1 68414.m00997 CCAAT-box binding transcription factor ... 104 7e-23
At1g54830.3 68414.m06253 CCAAT-box binding transcription factor ... 103 2e-22
At1g54830.2 68414.m06252 CCAAT-box binding transcription factor ... 103 2e-22
At1g54830.1 68414.m06251 CCAAT-box binding transcription factor ... 103 2e-22
At1g56170.1 68414.m06454 transcription factor, putative similar ... 102 3e-22
At5g63470.1 68418.m07968 CCAAT-box binding transcription factor ... 101 9e-22
At3g48590.1 68416.m05305 CCAAT-box binding transcription factor ... 100 1e-21
At5g50480.1 68418.m06252 CCAAT-box binding transcription factor ... 81 1e-15
At5g27910.1 68418.m03352 CCAAT-box binding transcription factor ... 81 1e-15
At5g50490.1 68418.m06254 CCAAT-box binding transcription factor ... 72 6e-13
At5g50470.1 68418.m06250 CCAAT-box binding transcription factor ... 72 6e-13
At5g38140.1 68418.m04596 histone-like transcription factor (CBF/... 68 1e-11
At3g12480.1 68416.m01553 transcription factor, putative 45 6e-05
At5g43250.1 68418.m05285 transcription factor, putative similar ... 41 0.001
At1g60440.1 68414.m06804 eukaryotic pantothenate kinase family p... 29 3.2
At3g09580.1 68416.m01138 amine oxidase family protein low simila... 29 5.5
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 28 7.3
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 28 9.7
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi... 28 9.7
>At1g08970.4 68414.m01000 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 104 bits (250), Expect = 7e-23
Identities = 50/77 (64%), Positives = 62/77 (80%)
Frame = +1
Query: 286 AQTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEI 465
AQ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A E+
Sbjct: 56 AQQLQAFWENQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEM 113
Query: 466 FIHELTLRAWSHTEEIK 516
FI ELTLR+W+HTEE K
Sbjct: 114 FILELTLRSWNHTEENK 130
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
++ ++D FDFL+DIVPR +++
Sbjct: 142 AVTRTDIFDFLVDIVPREDLR 162
>At1g08970.3 68414.m00999 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 104 bits (250), Expect = 7e-23
Identities = 50/77 (64%), Positives = 62/77 (80%)
Frame = +1
Query: 286 AQTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEI 465
AQ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A E+
Sbjct: 56 AQQLQAFWENQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEM 113
Query: 466 FIHELTLRAWSHTEEIK 516
FI ELTLR+W+HTEE K
Sbjct: 114 FILELTLRSWNHTEENK 130
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
++ ++D FDFL+DIVPR +++
Sbjct: 142 AVTRTDIFDFLVDIVPREDLR 162
>At1g08970.2 68414.m00998 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 104 bits (250), Expect = 7e-23
Identities = 50/77 (64%), Positives = 62/77 (80%)
Frame = +1
Query: 286 AQTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEI 465
AQ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A E+
Sbjct: 56 AQQLQAFWENQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEM 113
Query: 466 FIHELTLRAWSHTEEIK 516
FI ELTLR+W+HTEE K
Sbjct: 114 FILELTLRSWNHTEENK 130
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
++ ++D FDFL+DIVPR +++
Sbjct: 142 AVTRTDIFDFLVDIVPREDLR 162
>At1g08970.1 68414.m00997 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 104 bits (250), Expect = 7e-23
Identities = 50/77 (64%), Positives = 62/77 (80%)
Frame = +1
Query: 286 AQTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEI 465
AQ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A E+
Sbjct: 56 AQQLQAFWENQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEM 113
Query: 466 FIHELTLRAWSHTEEIK 516
FI ELTLR+W+HTEE K
Sbjct: 114 FILELTLRSWNHTEENK 130
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
++ ++D FDFL+DIVPR +++
Sbjct: 142 AVTRTDIFDFLVDIVPREDLR 162
>At1g54830.3 68414.m06253 CCAAT-box binding transcription factor
Hap5a, putative similar to heme activated protein
GI:6289057 from (Arabidopsis thaliana) GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
similar to Transcription factor GB:CAA74053 GI:2398533
from [Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 217
Score = 103 bits (246), Expect = 2e-22
Identities = 49/76 (64%), Positives = 61/76 (80%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A E+F
Sbjct: 47 QQLQSFWETQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMF 104
Query: 469 IHELTLRAWSHTEEIK 516
I ELTLR+W+HTEE K
Sbjct: 105 ILELTLRSWNHTEENK 120
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
++ ++D FDFL+DIVPR +++
Sbjct: 132 AVTRTDIFDFLVDIVPREDLR 152
>At1g54830.2 68414.m06252 CCAAT-box binding transcription factor
Hap5a, putative similar to heme activated protein
GI:6289057 from (Arabidopsis thaliana) GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
similar to Transcription factor GB:CAA74053 GI:2398533
from [Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 217
Score = 103 bits (246), Expect = 2e-22
Identities = 49/76 (64%), Positives = 61/76 (80%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A E+F
Sbjct: 47 QQLQSFWETQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMF 104
Query: 469 IHELTLRAWSHTEEIK 516
I ELTLR+W+HTEE K
Sbjct: 105 ILELTLRSWNHTEENK 120
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
++ ++D FDFL+DIVPR +++
Sbjct: 132 AVTRTDIFDFLVDIVPREDLR 152
>At1g54830.1 68414.m06251 CCAAT-box binding transcription factor
Hap5a, putative similar to heme activated protein
GI:6289057 from (Arabidopsis thaliana) GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
similar to Transcription factor GB:CAA74053 GI:2398533
from [Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 217
Score = 103 bits (246), Expect = 2e-22
Identities = 49/76 (64%), Positives = 61/76 (80%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A E+F
Sbjct: 47 QQLQSFWETQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMF 104
Query: 469 IHELTLRAWSHTEEIK 516
I ELTLR+W+HTEE K
Sbjct: 105 ILELTLRSWNHTEENK 120
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
++ ++D FDFL+DIVPR +++
Sbjct: 132 AVTRTDIFDFLVDIVPREDLR 152
>At1g56170.1 68414.m06454 transcription factor, putative similar to
Transcription factor GB:CAA74053 GI:2398533 from
[Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 199
Score = 102 bits (245), Expect = 3e-22
Identities = 50/76 (65%), Positives = 60/76 (78%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q LQ FW +++I+ ++ DFK LPLARIKKIMK DE+V+MISAEAPV+FAKA E+F
Sbjct: 53 QQLQMFWANQMQEIE--HTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMF 110
Query: 469 IHELTLRAWSHTEEIK 516
I ELTLRAW HTEE K
Sbjct: 111 ILELTLRAWIHTEENK 126
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
+I ++D FDFL+DI+PR E+K
Sbjct: 138 AISRTDVFDFLVDIIPRDELK 158
>At5g63470.1 68418.m07968 CCAAT-box binding transcription factor
Hap5a, putative
Length = 250
Score = 101 bits (241), Expect = 9e-22
Identities = 49/76 (64%), Positives = 59/76 (77%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q LQ FW ++I++VN DFK LPLARIKKIMK DE+V+MISAEAP+LFAKA E+F
Sbjct: 55 QQLQMFWTYQRQEIEQVN--DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELF 112
Query: 469 IHELTLRAWSHTEEIK 516
I ELT+R+W H EE K
Sbjct: 113 ILELTIRSWLHAEENK 128
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
+I ++D FDFL+DIVPR E+K
Sbjct: 140 AITRTDIFDFLVDIVPREEIK 160
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 441 LIREGC*DFYTRANVASLVAYGGNKRRTLQRNDIA 545
L + C F + S + NKRRTLQ+NDIA
Sbjct: 104 LFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 138
>At3g48590.1 68416.m05305 CCAAT-box binding transcription factor
Hap5a, putative
Length = 234
Score = 100 bits (239), Expect = 1e-21
Identities = 49/76 (64%), Positives = 59/76 (77%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
Q LQ FW ++I++VN DFK LPLARIKKIMK DE+V+MISAEAP+LFAKA E+F
Sbjct: 42 QQLQLFWTYQRQEIEQVN--DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELF 99
Query: 469 IHELTLRAWSHTEEIK 516
I ELT+R+W H EE K
Sbjct: 100 ILELTIRSWLHAEENK 115
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +2
Query: 548 SILKSDQFDFLIDIVPRHEVK 610
+I ++D FDFL+DIVPR E+K
Sbjct: 127 AITRTDIFDFLVDIVPRDEIK 147
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 441 LIREGC*DFYTRANVASLVAYGGNKRRTLQRNDIA 545
L + C F + S + NKRRTLQ+NDIA
Sbjct: 91 LFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 125
>At5g50480.1 68418.m06252 CCAAT-box binding transcription factor
Hap5a, putative GI:14577940 CCAAT-binding protein
subunit HAP5 {Hypocrea jecorina} similar to
Transcription factor GB:CAA74053 GI:2398533 from
[Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 202
Score = 81.0 bits (191), Expect = 1e-15
Identities = 39/74 (52%), Positives = 53/74 (71%)
Frame = +1
Query: 295 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 474
L+ +W + +E + DFK + LPLARIKKIMK D +V M+SAEAP++FAKA E+FI
Sbjct: 36 LRNYWIEQMETVS-----DFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIV 90
Query: 475 ELTLRAWSHTEEIK 516
+LT+R+W EE K
Sbjct: 91 DLTMRSWLKAEENK 104
>At5g27910.1 68418.m03352 CCAAT-box binding transcription factor
Hap5a, putative
Length = 187
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/78 (48%), Positives = 53/78 (67%)
Frame = +1
Query: 283 GAQTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAE 462
G + L+ FW K +E + DFK LP+ RIKKIMK D +V MI++EAP+L +KA E
Sbjct: 14 GNEQLKSFWSKEME-----GNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACE 68
Query: 463 IFIHELTLRAWSHTEEIK 516
+FI +LT+R+W H +E K
Sbjct: 69 MFIMDLTMRSWLHAQESK 86
>At5g50490.1 68418.m06254 CCAAT-box binding transcription factor
Hap5a, putative
Length = 186
Score = 71.7 bits (168), Expect = 6e-13
Identities = 33/74 (44%), Positives = 50/74 (67%)
Frame = +1
Query: 289 QTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIF 468
+ L+ FW K +E V + +F P++RIK+IMK D +V MI+AEAP L +KA E+F
Sbjct: 16 EQLKSFWSKGMEGDLNVKNHEF-----PISRIKRIMKFDPDVSMIAAEAPNLLSKACEMF 70
Query: 469 IHELTLRAWSHTEE 510
+ +LT+R+W H +E
Sbjct: 71 VMDLTMRSWLHAQE 84
>At5g50470.1 68418.m06250 CCAAT-box binding transcription factor
Hap5a, putative contains similarity to GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
Length = 212
Score = 71.7 bits (168), Expect = 6e-13
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = +1
Query: 331 QKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEE 510
Q N+ D K A PL RIKKIMK + EV M++AEAPVL +KA E+ I +LT+R+W HT E
Sbjct: 52 QMGNATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVE 111
>At5g38140.1 68418.m04596 histone-like transcription factor
(CBF/NF-Y) family protein similar to CCAAT-binding
transcription factor subunit AAB-1 (GI:2583171)
[Neurospora crassa]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 195
Score = 67.7 bits (158), Expect = 1e-11
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +1
Query: 313 KVLEDIQKVNSEDFKTQA-LPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLR 489
KV + Q+ +F Q LPL+R++KI+K D EVK IS + P LF+KA E FI E+TLR
Sbjct: 49 KVFWNNQREQLGNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLR 108
Query: 490 AWSHTE 507
AW HT+
Sbjct: 109 AWMHTQ 114
>At3g12480.1 68416.m01553 transcription factor, putative
Length = 293
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +1
Query: 370 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEE 510
P ARIKKIM+ DE+V I+ PVL +K+ E+F+ +L R + T E
Sbjct: 10 PAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLE 56
>At5g43250.1 68418.m05285 transcription factor, putative similar to
heme activated protein GI:6289057 from (Arabidopsis
thaliana) GI:14577940 CCAAT-binding protein subunit HAP5
{Hypocrea jecorina} similar to Transcription factor
GB:CAA74053 GI:2398533 from [Arabidopsis thaliana]
similarity to transcription factor Hap5a similar to
transcription factor Hap5a [Arabidopsis
thaliana](GI:6523090)
Length = 130
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +1
Query: 370 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEEIK 516
P+ R+KKIMKLD+++ I++EA + + E+F+H L ++ T E K
Sbjct: 13 PIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEKK 61
>At1g60440.1 68414.m06804 eukaryotic pantothenate kinase family
protein similar to pantothenate kinase GI:4191500 from
[Aspergillus nidulans]; contains Pfam profile PF03630:
Fumble
Length = 383
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 254 ISVHFFGRGNRRCLFGRHKEAHGHFVVFSTNFTRQTH 144
++VHF+ RG + +F RH+ G F T++ Q+H
Sbjct: 304 VAVHFWSRGEAKAMFLRHEGFLGALGAF-TSYNDQSH 339
>At3g09580.1 68416.m01138 amine oxidase family protein low
similarity to SP|P28553 Phytoene dehydrogenase,
chloroplast precursor (Phytoene desaturase) from Glycine
max; contains Pfam profile PF01593 amine oxidase,
flavin-containing
Length = 477
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 286 AQTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVL 444
A L+ FWD V + S K + L R + ++K DEE+ + E P +
Sbjct: 139 ADPLRHFWDSVASLANPIGSVVDKG-LIALTRARVLIKSDEEILTAADEVPTI 190
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 280 GGAQTLQQFWD-KVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEV--KMISAEAPVLFA 450
GG + WD K +E ++K N EDF+ Q + I+++ + E+ K+ E + +A
Sbjct: 682 GGMEAKSNKWDDKKIEGLKK-NKEDFEQQLENIGSIREMQMKESEISGKISGLEKKIQYA 740
Query: 451 K 453
+
Sbjct: 741 E 741
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +3
Query: 237 EEVDADLPVRSPPLRRRTNPPAVLGQSLRGHTES*F---RRLQDPSFAVGSHQEDHETRR 407
E + D+P S P+ R + V G ES R L+ F + + + D E +R
Sbjct: 425 ERIAEDIPSCSLPIDRVSGLSIVDLSVSAGLFESKSAARRMLKQGGFYMNNERVDDENKR 484
Query: 408 GGEDDISRGTGLI 446
E+DI G GL+
Sbjct: 485 VDEEDIVEGRGLV 497
>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1155
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 352 FKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELT 483
FK Q L+ ++ MKL E KM AEA AK E + + T
Sbjct: 1001 FKLQQESLSHKRQAMKLRREGKMQEAEAEFEIAKTLEAQLEDST 1044
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,035
Number of Sequences: 28952
Number of extensions: 314902
Number of successful extensions: 819
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -