Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30164.Seq
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 118 8e-28
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 30 0.38
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 30 0.51
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.2
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.2
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 2.0
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 3.6
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 4.7
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 26 6.2
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 26 6.2
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.2
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 8.2
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 8.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 8.2
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 118 bits (285), Expect = 8e-28
Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 2/224 (0%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+D+ D R+ D+V+I PCP +KY +R+ +L
Sbjct: 78 VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
P+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F G+ K F +
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFG--I 195
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTSAV--VANNWAQIKEMVELPLRSSFTVSRLLE 756
+ + + ++ + L+ + + AQI+E+VELPLR + + +
Sbjct: 196 VSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHP-QLFKSIG 254
Query: 757 *KLPRGILHVWGRLVTGKNTHWLVLLLMETGASSFLINGPGIMS 888
K PRGIL ++G TGK T + ETGA FLINGP IMS
Sbjct: 255 IKPPRGIL-MYGPPGTGK-TLMARAVANETGAFFFLINGPEIMS 296
Score = 98.7 bits (235), Expect = 1e-21
Identities = 58/118 (49%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L VGYDDIGGCR+Q+
Sbjct: 174 VRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQM 233
Query: 690 GAN*GDGGVATAVILH--CFKAIGVKASTRHSPCMGPPXNRKKHSLARAVANGNRGFF 857
+ + H FK+IG+K R GPP K +ARAVAN FF
Sbjct: 234 AQ---IRELVELPLRHPQLFKSIGIK-PPRGILMYGPPGTGKT-LMARAVANETGAFF 286
Score = 88.6 bits (210), Expect = 1e-18
Identities = 41/68 (60%), Positives = 53/68 (77%)
Frame = +2
Query: 53 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 232
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 233 GKRRKETV 256
GKRRK+TV
Sbjct: 81 GKRRKDTV 88
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 30.3 bits (65), Expect = 0.38
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 548 DHFELDGAHAPAD-LKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 384
DH L +H PA+ LK I A++ G T +PV P+ ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 29.9 bits (64), Expect = 0.51
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 799 VTGKNTHWLVLLLMETGASSFLINGPGI 882
+T HWLV L+ ++ A+SFL GP I
Sbjct: 141 ITTPQLHWLVRLINKSTAASFLEEGPPI 168
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -3
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -3
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 191
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 391 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 281
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 27 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 200
F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342
Query: 201 NS 206
S
Sbjct: 343 RS 344
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 576 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 665
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -2
Query: 782 WRMPRGSFHSNSLETVKDDRSGNSTISLICAQLFATTADVIIADSI*CFLFFLT 621
W M SF +NSL +D +S N IC+ T ++ DS C L FLT
Sbjct: 135 WDMQSQSFVTNSLHYYEDVKSSN-----ICSS-HTPTQLLVDPDSDCCLLRFLT 182
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 391 LVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCNGF 248
L FH ++ D W PH+ + G F H + +G + R GF
Sbjct: 177 LGFHPNVGDYFDWYPHRPNHFGGKFDGHSRGRGAGRGGFCGRHGRGGF 224
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 99 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRAN 239
SSV S S ++M++ + +F+ S+ +SSV T + S +N
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSN 375
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 77 PD-DLSTAILRRKDRPNRLIVEEAVSD 154
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 8.2
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1
Query: 694 QIKEMVELPLRSSFTVSRLLE*KLPRGILHVWGRLVTGKNTHWLVLLLMETGASSFLING 873
++KE VE PL T SR L + P+G+L ++G K T + ETG + + G
Sbjct: 559 KLKESVEWPLTHGETFSR-LGVRPPKGVL-LYGPPGCSK-TITAKAIATETGLNFIAVKG 615
Query: 874 P 876
P
Sbjct: 616 P 616
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 208
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,744,161
Number of Sequences: 5004
Number of extensions: 77118
Number of successful extensions: 238
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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