Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30164.Seq
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 144 1e-34
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 134 6e-32
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 134 6e-32
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 29 5.9
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 29 5.9
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 29 5.9
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 5.9
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 29 5.9
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 144 bits (348), Expect = 1e-34
Identities = 86/224 (38%), Positives = 130/224 (58%), Gaps = 2/224 (0%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + + I++SD++CP+EK+RM DVVSI P P++ YG R+H+L
Sbjct: 64 ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F A K + + +
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVET--EPAPACI 181
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTSAV--VANNWAQIKEMVELPLRSSFTVSRLLE 756
+ P + ++++ + ++ + + V AQIKEMVELPLR + + +
Sbjct: 182 VSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHP-QLFKAIG 240
Query: 757 *KLPRGILHVWGRLVTGKNTHWLVLLLMETGASSFLINGPGIMS 888
K PRGIL ++G TGK T + ETG+ FLINGP +MS
Sbjct: 241 IKPPRGIL-LFGPPGTGK-TLIARAVANETGSFFFLINGPEVMS 282
Score = 111 bits (268), Expect = 5e-25
Identities = 62/116 (53%), Positives = 76/116 (65%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
V+ MR VEFKVVET+P+P CIV+PDT+IH +G+PIKREEEEE++N +GYDD+GG RKQL
Sbjct: 160 VQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQL 219
Query: 690 GAN*GDGGVATAVILHCFKAIGVKASTRHSPCMGPPXNRKKHSLARAVANGNRGFF 857
A + FKAIG+K R GPP K +ARAVAN FF
Sbjct: 220 -AQIKEMVELPLRHPQLFKAIGIK-PPRGILLFGPPGTGKT-LIARAVANETGSFF 272
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72
Query: 251 TVA 259
+VA
Sbjct: 73 SVA 75
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 134 bits (325), Expect = 6e-32
Identities = 88/224 (39%), Positives = 127/224 (56%), Gaps = 2/224 (0%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + + +
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVET--DPAPACI 180
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTSAV--VANNWAQIKEMVELPLRSSFTVSRLLE 756
+ P + ++++ + L+ + + V AQIKEMVELPLR + + +
Sbjct: 181 VAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHP-QLFKAIG 239
Query: 757 *KLPRGILHVWGRLVTGKNTHWLVLLLMETGASSFLINGPGIMS 888
K PRGIL ++G TGK T + ETGA FLINGP IMS
Sbjct: 240 VKPPRGIL-LFGPPGTGK-TLIARAVANETGAFFFLINGPEIMS 281
Score = 119 bits (286), Expect = 3e-27
Identities = 69/116 (59%), Positives = 76/116 (65%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG RKQL
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL 218
Query: 690 GAN*GDGGVATAVILHCFKAIGVKASTRHSPCMGPPXNRKKHSLARAVANGNRGFF 857
A + FKAIGVK R GPP K +ARAVAN FF
Sbjct: 219 -AQIKEMVELPLRHPQLFKAIGVK-PPRGILLFGPPGTGKT-LIARAVANETGAFF 271
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 134 bits (325), Expect = 6e-32
Identities = 88/224 (39%), Positives = 127/224 (56%), Gaps = 2/224 (0%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + + +
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVET--DPAPACI 180
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTSAV--VANNWAQIKEMVELPLRSSFTVSRLLE 756
+ P + ++++ + L+ + + V AQIKEMVELPLR + + +
Sbjct: 181 VAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHP-QLFKAIG 239
Query: 757 *KLPRGILHVWGRLVTGKNTHWLVLLLMETGASSFLINGPGIMS 888
K PRGIL ++G TGK T + ETGA FLINGP IMS
Sbjct: 240 VKPPRGIL-LFGPPGTGK-TLIARAVANETGAFFFLINGPEIMS 281
Score = 119 bits (286), Expect = 3e-27
Identities = 69/116 (59%), Positives = 76/116 (65%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG RKQL
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL 218
Query: 690 GAN*GDGGVATAVILHCFKAIGVKASTRHSPCMGPPXNRKKHSLARAVANGNRGFF 857
A + FKAIGVK R GPP K +ARAVAN FF
Sbjct: 219 -AQIKEMVELPLRHPQLFKAIGVK-PPRGILLFGPPGTGKT-LIARAVANETGAFF 271
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 552 TDPSPFCIVAPDTVIHCDGEPIKREEEEE--ALNAVGYD 662
++P+P VAP+ + E + E+EE A+ +GYD
Sbjct: 153 SNPAPAADVAPEAAAPAEAEALTDEQEENVLAITGMGYD 191
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 606 GEPIKREEEEEA-LNAVGYDDIGGCRKQLGAN*GDGGVATAVILHCFKAIGVKASTRHSP 782
G P+K + ++++ +++ DD GG + G N +G V + +G+ AST
Sbjct: 1189 GRPLKGKRDDDSQRSSLMMDDDGGSSEADGEN-SEGDVPRGGVRKAVPRMGISASTLAHS 1247
Query: 783 CMG 791
C G
Sbjct: 1248 CYG 1250
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 606 GEPIKREEEEEA-LNAVGYDDIGGCRKQLGAN*GDGGVATAVILHCFKAIGVKASTRHSP 782
G P+K + ++++ +++ DD GG + G N +G V + +G+ AST
Sbjct: 1185 GRPLKGKRDDDSQRSSLMMDDDGGSSEADGEN-SEGDVPRGGVRKAVPRMGISASTLAHS 1243
Query: 783 CMG 791
C G
Sbjct: 1244 CYG 1246
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
++ AF++C + N+LL SK+ Y FY
Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 606 GEPIKREEEEEA-LNAVGYDDIGGCRKQLGAN*GDGGVATAVILHCFKAIGVKASTRHSP 782
G P+K + ++++ +++ DD GG + G N +G V + +G+ AST
Sbjct: 1189 GRPLKGKRDDDSQRSSLMMDDDGGSSEADGEN-SEGDVPRGGVRKAVPRMGISASTLAHS 1247
Query: 783 CMG 791
C G
Sbjct: 1248 CYG 1250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,328,017
Number of Sequences: 27780
Number of extensions: 457728
Number of successful extensions: 1227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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