Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30163.Seq
(824 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein. 117 6e-26
X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein... 117 6e-26
M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-bindi... 117 6e-26
L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A pro... 117 6e-26
BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain prote... 117 6e-26
BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein. 117 6e-26
BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain prote... 117 6e-26
BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain prote... 117 6e-26
AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant pr... 117 6e-26
BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein. 116 1e-25
M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive elemen... 114 3e-25
M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein. 114 3e-25
M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-bindi... 114 3e-25
L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens db... 114 3e-25
BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein. 114 3e-25
BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for IM... 114 3e-25
BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1... 114 3e-25
BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein. 114 3e-25
J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein. 114 4e-25
BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2... 113 6e-25
BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2... 113 6e-25
AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-bo... 113 6e-25
DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein. 108 3e-23
AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-bo... 95 4e-19
Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C. eleg... 48 3e-05
DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein. 48 3e-05
BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for IM... 48 3e-05
BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for IM... 48 3e-05
BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein. 48 3e-05
BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein. 48 3e-05
BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein. 48 3e-05
AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C. el... 48 3e-05
AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens ... 48 3e-05
BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein. 44 5e-04
AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C. ele... 44 5e-04
AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens ... 44 5e-04
AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN... 44 5e-04
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 31 6.7
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 31 6.7
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 31 6.7
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 31 6.7
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 31 6.7
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 31 6.7
>X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein.
Length = 372
Score = 117 bits (281), Expect = 6e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 166 EGSRYAADRRR-YRRGYYGRR 185
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein A
protein.
Length = 372
Score = 117 bits (281), Expect = 6e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 166 EGSRYAADRRR-YRRGYYGRR 185
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-binding
protein A (dbpA) gene, 3' end. ).
Length = 412
Score = 117 bits (281), Expect = 6e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 176 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 235
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 236 EGSRYAADRRR-YRRGYYGRR 255
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 156 VLATKVLGTVKWFNVRNGYGFINR 179
>L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A
protein.
Length = 342
Score = 117 bits (281), Expect = 6e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 166 EGSRYAADRRR-YRRGYYGRR 185
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 117 bits (281), Expect = 6e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 166 EGSRYAADRRR-YRRGYYGRR 185
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 117 bits (281), Expect = 6e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 166 EGSRYAADRRR-YRRGYYGRR 185
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 117 bits (281), Expect = 6e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 166 EGSRYAADRRR-YRRGYYGRR 185
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 117 bits (281), Expect = 6e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 166 EGSRYAADRRR-YRRGYYGRR 185
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant
protein.
Length = 134
Score = 117 bits (281), Expect = 6e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 39 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 98
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 99 EGSRYAADRRR-YRRGYYGRR 118
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 19 VLATKVLGTVKWFNVRNGYGFINR 42
>BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 116 bits (278), Expect = 1e-25
Identities = 56/81 (69%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RS+GDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 166 EGSRYAADRRR-YRRGYYGRR 185
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive element
binding protein-1 protein.
Length = 322
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 73 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 132
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 133 QGSKYAAD--RNHYRRY-PRR 150
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 53 VIATKVLGTVKWFNVRNGYGFINR 76
>M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein.
Length = 320
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 71 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 130
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 131 QGSKYAAD--RNHYRRY-PRR 148
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 51 VIATKVLGTVKWFNVRNGYGFINR 74
>M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-binding
protein B (dbpB) gene, 3' end. ).
Length = 364
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 114 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 173
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 174 QGSKYAAD--RNHYRRY-PRR 191
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 94 VIATKVLGTVKWFNVRNGYGFINR 117
>L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens
dbpB-like protein mRNA, complete cds. ).
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for
IMAGE:3882730) protein.
Length = 267
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 114 bits (275), Expect = 3e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein.
Length = 317
Score = 114 bits (274), Expect = 4e-25
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGEEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 113 bits (273), Expect = 6e-25
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PV
Sbjct: 109 FINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPV 168
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YA ++R+ R++ PR
Sbjct: 169 KGSRYAPNRRKS--RRFIPR 186
Score = 44.4 bits (100), Expect = 5e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A +V GTVKWFNV++GYGFINR
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINR 112
>BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 113 bits (273), Expect = 6e-25
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PV
Sbjct: 109 FINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPV 168
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YA ++R+ R++ PR
Sbjct: 169 KGSRYAPNRRKS--RRFIPR 186
Score = 44.4 bits (100), Expect = 5e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A +V GTVKWFNV++GYGFINR
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINR 112
>AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-box
binding protein protein.
Length = 364
Score = 113 bits (273), Expect = 6e-25
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PV
Sbjct: 109 FINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPV 168
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YA ++R+ R++ PR
Sbjct: 169 KGSRYAPNRRKS--RRFIPR 186
Score = 44.4 bits (100), Expect = 5e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A +V GTVKWFNV++GYGFINR
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINR 112
>DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein.
Length = 319
Score = 108 bits (259), Expect = 3e-23
Identities = 54/80 (67%), Positives = 63/80 (78%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVH TA +NNPRK +RSVGDGE VEF VV GEKG +AA VTGPGG PV
Sbjct: 70 FIHRNDTKEDVFVHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGEKGAKAANVTGPGGVPV 129
Query: 421 KGSPYAADKRRGYHRQYFPR 480
+GS YAAD R ++R+Y PR
Sbjct: 130 QGSKYAAD--RNHYRRY-PR 146
Score = 45.6 bits (103), Expect = 2e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFI+R
Sbjct: 50 VIATKVLGTVKWFNVRNGYGFIHR 73
>AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-box
binding protein variant protein.
Length = 268
Score = 94.7 bits (225), Expect = 4e-19
Identities = 46/70 (65%), Positives = 54/70 (77%)
Frame = +1
Query: 271 VFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 450
+F +QTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++R
Sbjct: 23 LFPNQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRR 82
Query: 451 RGYHRQYFPR 480
+ R++ PR
Sbjct: 83 KS--RRFIPR 90
>Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 48.4 bits (110), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 57 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein.
Length = 250
Score = 48.4 bits (110), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 57 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127315) protein.
Length = 227
Score = 48.4 bits (110), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127314) protein.
Length = 227
Score = 48.4 bits (110), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 48.4 bits (110), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 48.4 bits (110), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 48.4 bits (110), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 48.4 bits (110), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 57 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens
cDNA FLJ16517 fis, clone NT2RI3007167. ).
Length = 250
Score = 48.4 bits (110), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 57 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein.
Length = 209
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 411
D DVFVHQ+ + + RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 67 DPPVDVFVHQSKLHM----EGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFINRMTPR 265
+G KWFNV+ G+GF++ MT R
Sbjct: 41 AGICKWFNVRMGFGFLS-MTAR 61
>AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C.
elegans) protein.
Length = 209
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 411
D DVFVHQ+ + + RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 67 DPPVDVFVHQSKLHM----EGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFINRMTPR 265
+G KWFNV+ G+GF++ MT R
Sbjct: 41 AGICKWFNVRMGFGFLS-MTAR 61
>AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens
cDNA FLJ12457 fis, clone NT2RM1000666, weakly similar to
DNA-BINDING PROTEIN A. ).
Length = 209
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 411
D DVFVHQ+ + + RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 67 DPPVDVFVHQSKLHM----EGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFINRMTPR 265
+G KWFNV+ G+GF++ MT R
Sbjct: 41 AGICKWFNVRMGFGFLS-MTAR 61
>AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN-28
protein.
Length = 209
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 411
D DVFVHQ+ + + RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 67 DPPVDVFVHQSKLHM----EGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFINRMTPR 265
+G KWFNV+ G+GF++ MT R
Sbjct: 41 AGICKWFNVRMGFGFLS-MTAR 61
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 30.7 bits (66), Expect = 6.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 456
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 30.7 bits (66), Expect = 6.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 456
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 30.7 bits (66), Expect = 6.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 456
GE+GF G+ GP GEP K P A RG
Sbjct: 544 GERGFP--GLPGPSGEPGKQGPSGASGERG 571
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 30.7 bits (66), Expect = 6.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 456
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 30.7 bits (66), Expect = 6.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 456
GE+GF G+ GP GEP K P A RG
Sbjct: 965 GERGFP--GLPGPSGEPGKQGPSGASGERG 992
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 30.7 bits (66), Expect = 6.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 456
GE+GF G+ GP GEP K P A RG
Sbjct: 971 GERGFP--GLPGPSGEPGKQGPSGASGERG 998
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,396,744
Number of Sequences: 237096
Number of extensions: 1720306
Number of successful extensions: 5244
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 4913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5244
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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