Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30161.Seq
(888 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95) 59 5e-09
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.41
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 30 2.2
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 30 2.9
SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018) 29 5.0
SB_17388| Best HMM Match : rve (HMM E-Value=8.2e-17) 28 8.8
>SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)
Length = 209
Score = 58.8 bits (136), Expect = 5e-09
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1
Query: 229 RDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEV 363
R + ++ ++++AD VCFDVDSTV+ E IDELA FCG+G+EV
Sbjct: 2 RQMTESETRVIWKSADAVCFDVDSTVVTGEAIDELASFCGRGEEV 46
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3
Query: 522 LHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFN 650
L G VYLVSGGF+S++EP+A+ L IP N+FAN++ F N
Sbjct: 62 LLSHGTQVYLVSGGFQSILEPIAKDLGIPKTNVFANKILFNSN 104
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 32.7 bits (71), Expect = 0.41
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -1
Query: 861 LSLXSSXNQGXPPKPMKPSAGGXKPRASVAPVPGRSPGA 745
LSL SS PP P+KP + VAP PG SP A
Sbjct: 4571 LSLDSSPPTKRPPPPVKPKSIKKTSPKEVAPKPGGSPHA 4609
>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 31.5 bits (68), Expect = 0.94
Identities = 21/70 (30%), Positives = 38/70 (54%)
Frame = -2
Query: 383 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRAS 204
+S+ S +SS + +SSS +S + S+S + S+ NNS S ++S S+ +S
Sbjct: 196 SSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSNNSSSSSSSSSSSSSSSSSS 255
Query: 203 STSRTAGCFS 174
S+S ++ S
Sbjct: 256 SSSSSSSSSS 265
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 30.7 bits (66), Expect = 1.6
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Frame = -2
Query: 509 PVIPGVSLTGNFSMNSLI*PTLGLMMS-SLFFKASWNVILPPIASAVSLLTSS-PFPQNL 336
PV+P + SM S T + SL + N +A AV++ + P ++
Sbjct: 877 PVLPTTTSVLTSSMESSSMATTSTSSTPSLESSMTTNSTTSTLAEAVAISSLVLPTTTSV 936
Query: 335 ASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSRTAGCFSNCKE 162
+SSM SS M STS T S + + S +T + P+ +S +S T ++ E
Sbjct: 937 LTSSMESSSMATTSTS-STPSFESSMTTNSTTSTPAEAVPISSSVSSTTTSVLTSSME 993
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = -2
Query: 398 ILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*ST 219
+ PP +S+ +SSP P + +SSS SS + S+S + S+ ++S S ++S
Sbjct: 570 VSPPSSSS----SSSPPPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---- 621
Query: 218 PVRASSTSRTAGCFS 174
+SS+S + G FS
Sbjct: 622 --SSSSSSASLGYFS 634
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 29.9 bits (64), Expect = 2.9
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -2
Query: 389 PIASAVSLLTSSPFP-QNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPV 213
P+A + SL +SS + + LAS S SC +VE+ S + + N+ +S S P+
Sbjct: 886 PLAPSTSLTSSSAYSTEGLASGSESGSCPSVEA-SAEAKDCDNNSYSESDSPRREYSDPM 944
Query: 212 RA---SSTSRTAGCFSNCKEPS 156
R SS ++ S+ PS
Sbjct: 945 RGYPNSSIDNSSEADSSLGSPS 966
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 828 PPKPMKPSAGGXKPRASVAPVPGRSP 751
PP P+ P+ GG P +AP G P
Sbjct: 140 PPPPIAPATGGPPPPPPIAPATGGPP 165
>SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)
Length = 349
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 253 DSLLGRHHADRHQ*ERLQRRVL 188
DS ADRH+ ER+QRRVL
Sbjct: 55 DSKAAERRADRHRQERIQRRVL 76
>SB_17388| Best HMM Match : rve (HMM E-Value=8.2e-17)
Length = 441
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 321 AFILYDGRVYIEANAVRCPEQLRTVCWGDITLIDTSESVFNVAYCR 184
A ++ G Y+ A PEQ T CW LI S+ + YCR
Sbjct: 110 ANVVLRGPTYLRKTASALPEQTATACW---RLIHLSQCI-ETHYCR 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,554,214
Number of Sequences: 59808
Number of extensions: 528898
Number of successful extensions: 1610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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