Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30160.Seq
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 134 1e-31
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 134 1e-31
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 134 1e-31
Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical pr... 125 5e-29
Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical pr... 125 5e-29
Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical pr... 125 5e-29
Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical pr... 125 5e-29
AF040660-7|AAN65287.1| 366|Caenorhabditis elegans Hypothetical ... 62 4e-10
AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical... 54 2e-07
Z71178-8|CAA94882.1| 552|Caenorhabditis elegans Hypothetical pr... 30 2.0
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass... 29 3.4
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 29 3.4
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 29 3.4
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 3.4
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 134 bits (323), Expect = 1e-31
Identities = 68/129 (52%), Positives = 85/129 (65%), Gaps = 6/129 (4%)
Frame = +3
Query: 249 SEVLEILRQDEQFVRCLHAVG------SGGTPGWPCDPKNTIILHKPAENEIVXXXXXXX 410
++VLE L D FVRC+H+VG WPC+P+ +I H+P E EI
Sbjct: 196 TKVLEALG-DNDFVRCIHSVGLPRPVKQKVINHWPCNPEKVMIAHRPKEREIWSFGSGYG 254
Query: 411 XXXXXXKKCFALRLGSVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMM 590
KKCFALR+ I R EGWLAEHMLI+G+TNP+G++++IAAAFPSACGKTNLAM+
Sbjct: 255 GNSILGKKCFALRIACNIGRDEGWLAEHMLIMGVTNPEGEEKFIAAAFPSACGKTNLAML 314
Query: 591 TPNTGPGTK 617
TP T PG K
Sbjct: 315 TP-TVPGWK 322
Score = 74.5 bits (175), Expect = 9e-14
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = +1
Query: 124 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAK 255
GR MYV+P+SMGP+G PLSK G+E+TDSPYVV MR MTR+G K
Sbjct: 154 GRPMYVVPYSMGPIGGPLSKNGIELTDSPYVVLCMRTMTRMGTK 197
Score = 31.5 bits (68), Expect = 0.85
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 605 PGYKVXCVGDDIALMKFRXRTAYFRGHLXRKNGFFG 712
PG+KV VGDDIA MKF + + + GFFG
Sbjct: 319 PGWKVRVVGDDIAWMKFGADGRLYA--INPEAGFFG 352
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 134 bits (323), Expect = 1e-31
Identities = 68/129 (52%), Positives = 85/129 (65%), Gaps = 6/129 (4%)
Frame = +3
Query: 249 SEVLEILRQDEQFVRCLHAVG------SGGTPGWPCDPKNTIILHKPAENEIVXXXXXXX 410
++VLE L D FVRC+H+VG WPC+P+ +I H+P E EI
Sbjct: 86 TKVLEALG-DNDFVRCIHSVGLPRPVKQKVINHWPCNPEKVMIAHRPKEREIWSFGSGYG 144
Query: 411 XXXXXXKKCFALRLGSVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMM 590
KKCFALR+ I R EGWLAEHMLI+G+TNP+G++++IAAAFPSACGKTNLAM+
Sbjct: 145 GNSILGKKCFALRIACNIGRDEGWLAEHMLIMGVTNPEGEEKFIAAAFPSACGKTNLAML 204
Query: 591 TPNTGPGTK 617
TP T PG K
Sbjct: 205 TP-TVPGWK 212
Score = 74.5 bits (175), Expect = 9e-14
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = +1
Query: 124 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAK 255
GR MYV+P+SMGP+G PLSK G+E+TDSPYVV MR MTR+G K
Sbjct: 44 GRPMYVVPYSMGPIGGPLSKNGIELTDSPYVVLCMRTMTRMGTK 87
Score = 31.5 bits (68), Expect = 0.85
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 605 PGYKVXCVGDDIALMKFRXRTAYFRGHLXRKNGFFG 712
PG+KV VGDDIA MKF + + + GFFG
Sbjct: 209 PGWKVRVVGDDIAWMKFGADGRLYA--INPEAGFFG 242
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 134 bits (323), Expect = 1e-31
Identities = 68/129 (52%), Positives = 85/129 (65%), Gaps = 6/129 (4%)
Frame = +3
Query: 249 SEVLEILRQDEQFVRCLHAVG------SGGTPGWPCDPKNTIILHKPAENEIVXXXXXXX 410
++VLE L D FVRC+H+VG WPC+P+ +I H+P E EI
Sbjct: 196 TKVLEALG-DNDFVRCIHSVGLPRPVKQKVINHWPCNPEKVMIAHRPKEREIWSFGSGYG 254
Query: 411 XXXXXXKKCFALRLGSVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMM 590
KKCFALR+ I R EGWLAEHMLI+G+TNP+G++++IAAAFPSACGKTNLAM+
Sbjct: 255 GNSILGKKCFALRIACNIGRDEGWLAEHMLIMGVTNPEGEEKFIAAAFPSACGKTNLAML 314
Query: 591 TPNTGPGTK 617
TP T PG K
Sbjct: 315 TP-TVPGWK 322
Score = 74.5 bits (175), Expect = 9e-14
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = +1
Query: 124 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAK 255
GR MYV+P+SMGP+G PLSK G+E+TDSPYVV MR MTR+G K
Sbjct: 154 GRPMYVVPYSMGPIGGPLSKNGIELTDSPYVVLCMRTMTRMGTK 197
Score = 31.5 bits (68), Expect = 0.85
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 605 PGYKVXCVGDDIALMKFRXRTAYFRGHLXRKNGFFG 712
PG+KV VGDDIA MKF + + + GFFG
Sbjct: 319 PGWKVRVVGDDIAWMKFGADGRLYA--INPEAGFFG 352
>Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical
protein R11A5.4b protein.
Length = 582
Score = 125 bits (301), Expect = 5e-29
Identities = 61/120 (50%), Positives = 78/120 (65%), Gaps = 6/120 (5%)
Frame = +3
Query: 276 DEQFVRCLHAVG------SGGTPGWPCDPKNTIILHKPAENEIVXXXXXXXXXXXXXKKC 437
++ FVRC+H+VG WPC+P+ +I H+P E EI KKC
Sbjct: 217 NQDFVRCIHSVGLPRPVKQRVINHWPCNPERVLIAHRPPEREIWSFGSGYGGNSLLGKKC 276
Query: 438 FALRLGSVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPNTGPGTK 617
FALR+ S IA+ EGW+AEHMLI+G+T P G++ +IAAAFPSACGKTNLAM+ P T PG K
Sbjct: 277 FALRIASNIAKDEGWMAEHMLIMGVTRPCGREHFIAAAFPSACGKTNLAMLEP-TLPGWK 335
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = +1
Query: 124 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRI 246
GR MYVIPFSMGPVG PLSKIG+++TDS YVV SMR+MTR+
Sbjct: 167 GRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSMRIMTRV 207
Score = 35.5 bits (78), Expect = 0.052
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 605 PGYKVXCVGDDIALMKFRXRTAYFRGHLXRKNGFFG 712
PG+KV CVGDDIA MKF + + + GFFG
Sbjct: 332 PGWKVRCVGDDIAWMKFGEDGRLYA--INPEAGFFG 365
>Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical
protein R11A5.4d protein.
Length = 618
Score = 125 bits (301), Expect = 5e-29
Identities = 61/120 (50%), Positives = 78/120 (65%), Gaps = 6/120 (5%)
Frame = +3
Query: 276 DEQFVRCLHAVG------SGGTPGWPCDPKNTIILHKPAENEIVXXXXXXXXXXXXXKKC 437
++ FVRC+H+VG WPC+P+ +I H+P E EI KKC
Sbjct: 181 NQDFVRCIHSVGLPRPVKQRVINHWPCNPERVLIAHRPPEREIWSFGSGYGGNSLLGKKC 240
Query: 438 FALRLGSVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPNTGPGTK 617
FALR+ S IA+ EGW+AEHMLI+G+T P G++ +IAAAFPSACGKTNLAM+ P T PG K
Sbjct: 241 FALRIASNIAKDEGWMAEHMLIMGVTRPCGREHFIAAAFPSACGKTNLAMLEP-TLPGWK 299
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = +1
Query: 124 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRI 246
GR MYVIPFSMGPVG PLSKIG+++TDS YVV SMR+MTR+
Sbjct: 131 GRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSMRIMTRV 171
Score = 35.5 bits (78), Expect = 0.052
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 605 PGYKVXCVGDDIALMKFRXRTAYFRGHLXRKNGFFG 712
PG+KV CVGDDIA MKF + + + GFFG
Sbjct: 296 PGWKVRCVGDDIAWMKFGEDGRLYA--INPEAGFFG 329
>Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical
protein R11A5.4c protein.
Length = 587
Score = 125 bits (301), Expect = 5e-29
Identities = 61/120 (50%), Positives = 78/120 (65%), Gaps = 6/120 (5%)
Frame = +3
Query: 276 DEQFVRCLHAVG------SGGTPGWPCDPKNTIILHKPAENEIVXXXXXXXXXXXXXKKC 437
++ FVRC+H+VG WPC+P+ +I H+P E EI KKC
Sbjct: 150 NQDFVRCIHSVGLPRPVKQRVINHWPCNPERVLIAHRPPEREIWSFGSGYGGNSLLGKKC 209
Query: 438 FALRLGSVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPNTGPGTK 617
FALR+ S IA+ EGW+AEHMLI+G+T P G++ +IAAAFPSACGKTNLAM+ P T PG K
Sbjct: 210 FALRIASNIAKDEGWMAEHMLIMGVTRPCGREHFIAAAFPSACGKTNLAMLEP-TLPGWK 268
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = +1
Query: 124 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRI 246
GR MYVIPFSMGPVG PLSKIG+++TDS YVV SMR+MTR+
Sbjct: 100 GRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSMRIMTRV 140
Score = 35.5 bits (78), Expect = 0.052
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 605 PGYKVXCVGDDIALMKFRXRTAYFRGHLXRKNGFFG 712
PG+KV CVGDDIA MKF + + + GFFG
Sbjct: 265 PGWKVRCVGDDIAWMKFGEDGRLYA--INPEAGFFG 298
>Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical
protein R11A5.4a protein.
Length = 654
Score = 125 bits (301), Expect = 5e-29
Identities = 61/120 (50%), Positives = 78/120 (65%), Gaps = 6/120 (5%)
Frame = +3
Query: 276 DEQFVRCLHAVG------SGGTPGWPCDPKNTIILHKPAENEIVXXXXXXXXXXXXXKKC 437
++ FVRC+H+VG WPC+P+ +I H+P E EI KKC
Sbjct: 217 NQDFVRCIHSVGLPRPVKQRVINHWPCNPERVLIAHRPPEREIWSFGSGYGGNSLLGKKC 276
Query: 438 FALRLGSVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPNTGPGTK 617
FALR+ S IA+ EGW+AEHMLI+G+T P G++ +IAAAFPSACGKTNLAM+ P T PG K
Sbjct: 277 FALRIASNIAKDEGWMAEHMLIMGVTRPCGREHFIAAAFPSACGKTNLAMLEP-TLPGWK 335
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = +1
Query: 124 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRI 246
GR MYVIPFSMGPVG PLSKIG+++TDS YVV SMR+MTR+
Sbjct: 167 GRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSMRIMTRV 207
Score = 35.5 bits (78), Expect = 0.052
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 605 PGYKVXCVGDDIALMKFRXRTAYFRGHLXRKNGFFG 712
PG+KV CVGDDIA MKF + + + GFFG
Sbjct: 332 PGWKVRCVGDDIAWMKFGEDGRLYA--INPEAGFFG 365
>AF040660-7|AAN65287.1| 366|Caenorhabditis elegans Hypothetical
protein W05G11.6c protein.
Length = 366
Score = 62.5 bits (145), Expect = 4e-10
Identities = 27/38 (71%), Positives = 35/38 (92%)
Frame = +3
Query: 504 VGITNPQGKKRYIAAAFPSACGKTNLAMMTPNTGPGTK 617
+G+TNP+G++++IAAAFPSACGKTNLAM+TP T PG K
Sbjct: 1 MGVTNPEGEEKFIAAAFPSACGKTNLAMLTP-TVPGWK 37
Score = 31.5 bits (68), Expect = 0.85
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 605 PGYKVXCVGDDIALMKFRXRTAYFRGHLXRKNGFFG 712
PG+KV VGDDIA MKF + + + GFFG
Sbjct: 34 PGWKVRVVGDDIAWMKFGADGRLYA--INPEAGFFG 67
>AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical
protein H04M03.1 protein.
Length = 624
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 124 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRI 246
GRTMYV+PFSMG +GS + +GV+ITD P +V ++R R+
Sbjct: 179 GRTMYVVPFSMGTIGSRRAVVGVQITDDPVLVLNLRTTFRV 219
Score = 35.5 bits (78), Expect = 0.052
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Frame = +3
Query: 249 SEVLEILRQDEQFVRCLHAVGSGG-------TPGWPCDPKNTIILHKPAENEIVXXXXXX 407
S + + + F+RC+H +G TP P + ++ K + E V
Sbjct: 221 SNIWDHIAATTNFLRCVHTIGMPRPIIRKIVTPSPVETPVGSFLVLKHDDQE-VWAHGHS 279
Query: 408 XXXXXXXKKCFALRLGSVIARREGWLAEHMLIVGITNPQ 524
K F++ S + ++GWLAE I+ ITNP+
Sbjct: 280 FGRTPRYGKTFSVHAASWLGAKQGWLAESAAILAITNPK 318
>Z71178-8|CAA94882.1| 552|Caenorhabditis elegans Hypothetical
protein B0024.10 protein.
Length = 552
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -2
Query: 315 RSRLREDNERTARLDVEFLELRSNSSHDSHRINHVRR-IRDFYADLRERRSHRTHR 151
+++L+E+NER LDV F++L++ ++ + R+ +R+ D + RE+R R
Sbjct: 155 QAKLQEENERKKALDVNFVKLKAENA-ERDRLERLRQEAFDKDKESREKREQEQLR 209
>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform d protein.
Length = 1379
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Frame = +2
Query: 464 RSSRRMAGRTYA---YRRHNQPS 523
RS RR GRT++ YRRH QPS
Sbjct: 387 RSERRSGGRTHSHEEYRRHQQPS 409
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform b protein.
Length = 4034
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Frame = +2
Query: 464 RSSRRMAGRTYA---YRRHNQPS 523
RS RR GRT++ YRRH QPS
Sbjct: 387 RSERRSGGRTHSHEEYRRHQQPS 409
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform a protein.
Length = 1633
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Frame = +2
Query: 464 RSSRRMAGRTYA---YRRHNQPS 523
RS RR GRT++ YRRH QPS
Sbjct: 387 RSERRSGGRTHSHEEYRRHQQPS 409
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Frame = +2
Query: 464 RSSRRMAGRTYA---YRRHNQPS 523
RS RR GRT++ YRRH QPS
Sbjct: 387 RSERRSGGRTHSHEEYRRHQQPS 409
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,307,455
Number of Sequences: 27780
Number of extensions: 394309
Number of successful extensions: 1040
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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