Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30159.Seq
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    28   1.1  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 204 VQYQFVEVINKTLKSDLNTKLELFTMYVFNLFFYLSLVVILIM 76
           +  QF+  I  ++ +    KL     Y+  LF ++S++VIL M
Sbjct: 192 IAIQFIHFILASMPTKYIAKLNSVGTYLNTLFLFISMIVILAM 234


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 609 ITLFRCTYVYYFYXIRSGVF 550
           ++LF C YV YF  +  G+F
Sbjct: 77  LSLFYCAYVMYFLPLEVGLF 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,531
Number of Sequences: 5004
Number of extensions: 41305
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)