Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30158.Seq
(813 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC065299-1|AAH65299.1| 271|Homo sapiens signal recognition part... 64 4e-10
BC063001-1|AAH63001.1| 271|Homo sapiens signal recognition part... 64 4e-10
AK075531-1|BAC11675.1| 271|Homo sapiens protein ( Homo sapiens ... 64 4e-10
AF141882-1|AAD34888.3| 271|Homo sapiens APMCF1 protein. 64 4e-10
AF086914-1|AAP97144.1| 271|Homo sapiens signal recognition part... 64 4e-10
AK027525-1|BAB55176.1| 271|Homo sapiens protein ( Homo sapiens ... 63 1e-09
CR457225-1|CAG33506.1| 204|Homo sapiens ARFRP2 protein. 33 1.2
BC026093-1|AAH26093.1| 204|Homo sapiens ADP-ribosylation factor... 33 1.2
AK000058-1|BAA90915.1| 204|Homo sapiens protein ( Homo sapiens ... 33 1.2
>BC065299-1|AAH65299.1| 271|Homo sapiens signal recognition
particle receptor, B subunit protein.
Length = 271
Score = 64.5 bits (150), Expect = 4e-10
Identities = 47/125 (37%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Frame = +3
Query: 258 TLXFVXLAYSQYXQTFTSMKENIEXXITSNK---TLKIVDLPGXERLRNKFFXQHXSSAK 428
TL FV L Y T TS+ ++ +N +L ++DLPG E LR +F + SSA+
Sbjct: 78 TLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSAR 137
Query: 429 GIVFVIXSINIXEEIXDVAXYLYTILWIRSFXGTQLPX*YCG-NKQXQP*PKXAQLSKGY 605
IVFV+ S E+ DVA +LY +L I S P NKQ K A+L +
Sbjct: 138 AIVFVVDSAAFQREVKDVAEFLYQVL-IDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQ 196
Query: 606 SEKEL 620
EKEL
Sbjct: 197 LEKEL 201
Score = 35.9 bits (79), Expect = 0.17
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Frame = +1
Query: 145 TLLSLIV--LAV--TLIFWWIFSRRYTLRNSVLLMGLSDSG 255
TLLS++V LAV TL+FW + R + + +VLL+GL DSG
Sbjct: 36 TLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSG 76
>BC063001-1|AAH63001.1| 271|Homo sapiens signal recognition
particle receptor, B subunit protein.
Length = 271
Score = 64.5 bits (150), Expect = 4e-10
Identities = 47/125 (37%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Frame = +3
Query: 258 TLXFVXLAYSQYXQTFTSMKENIEXXITSNK---TLKIVDLPGXERLRNKFFXQHXSSAK 428
TL FV L Y T TS+ ++ +N +L ++DLPG E LR +F + SSA+
Sbjct: 78 TLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSAR 137
Query: 429 GIVFVIXSINIXEEIXDVAXYLYTILWIRSFXGTQLPX*YCG-NKQXQP*PKXAQLSKGY 605
IVFV+ S E+ DVA +LY +L I S P NKQ K A+L +
Sbjct: 138 AIVFVVDSAAFQREVKDVAEFLYQVL-IDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQ 196
Query: 606 SEKEL 620
EKEL
Sbjct: 197 LEKEL 201
Score = 35.9 bits (79), Expect = 0.17
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Frame = +1
Query: 145 TLLSLIV--LAV--TLIFWWIFSRRYTLRNSVLLMGLSDSG 255
TLLS++V LAV TL+FW + R + + +VLL+GL DSG
Sbjct: 36 TLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSG 76
>AK075531-1|BAC11675.1| 271|Homo sapiens protein ( Homo sapiens
cDNA PSEC0230 fis, clone HEMBA1006391, highly similar to
SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT. ).
Length = 271
Score = 64.5 bits (150), Expect = 4e-10
Identities = 47/125 (37%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Frame = +3
Query: 258 TLXFVXLAYSQYXQTFTSMKENIEXXITSNK---TLKIVDLPGXERLRNKFFXQHXSSAK 428
TL FV L Y T TS+ ++ +N +L ++DLPG E LR +F + SSA+
Sbjct: 78 TLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSAR 137
Query: 429 GIVFVIXSINIXEEIXDVAXYLYTILWIRSFXGTQLPX*YCG-NKQXQP*PKXAQLSKGY 605
IVFV+ S E+ DVA +LY +L I S P NKQ K A+L +
Sbjct: 138 AIVFVVDSAAFQREVKDVAEFLYQVL-IDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQ 196
Query: 606 SEKEL 620
EKEL
Sbjct: 197 LEKEL 201
Score = 35.9 bits (79), Expect = 0.17
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Frame = +1
Query: 145 TLLSLIV--LAV--TLIFWWIFSRRYTLRNSVLLMGLSDSG 255
TLLS++V LAV TL+FW + R + + +VLL+GL DSG
Sbjct: 36 TLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSG 76
>AF141882-1|AAD34888.3| 271|Homo sapiens APMCF1 protein.
Length = 271
Score = 64.5 bits (150), Expect = 4e-10
Identities = 47/125 (37%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Frame = +3
Query: 258 TLXFVXLAYSQYXQTFTSMKENIEXXITSNK---TLKIVDLPGXERLRNKFFXQHXSSAK 428
TL FV L Y T TS+ ++ +N +L ++DLPG E LR +F + SSA+
Sbjct: 78 TLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSAR 137
Query: 429 GIVFVIXSINIXEEIXDVAXYLYTILWIRSFXGTQLPX*YCG-NKQXQP*PKXAQLSKGY 605
IVFV+ S E+ DVA +LY +L I S P NKQ K A+L +
Sbjct: 138 AIVFVVDSAAFQREVKDVAEFLYQVL-IDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQ 196
Query: 606 SEKEL 620
EKEL
Sbjct: 197 LEKEL 201
Score = 35.9 bits (79), Expect = 0.17
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Frame = +1
Query: 145 TLLSLIV--LAV--TLIFWWIFSRRYTLRNSVLLMGLSDSG 255
TLLS++V LAV TL+FW + R + + +VLL+GL DSG
Sbjct: 36 TLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSG 76
>AF086914-1|AAP97144.1| 271|Homo sapiens signal recognition
particle receptor beta subunit protein.
Length = 271
Score = 64.5 bits (150), Expect = 4e-10
Identities = 47/125 (37%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Frame = +3
Query: 258 TLXFVXLAYSQYXQTFTSMKENIEXXITSNK---TLKIVDLPGXERLRNKFFXQHXSSAK 428
TL FV L Y T TS+ ++ +N +L ++DLPG E LR +F + SSA+
Sbjct: 78 TLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSAR 137
Query: 429 GIVFVIXSINIXEEIXDVAXYLYTILWIRSFXGTQLPX*YCG-NKQXQP*PKXAQLSKGY 605
IVFV+ S E+ DVA +LY +L I S P NKQ K A+L +
Sbjct: 138 AIVFVVDSAAFQREVKDVAEFLYQVL-IDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQ 196
Query: 606 SEKEL 620
EKEL
Sbjct: 197 LEKEL 201
Score = 35.9 bits (79), Expect = 0.17
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Frame = +1
Query: 145 TLLSLIV--LAV--TLIFWWIFSRRYTLRNSVLLMGLSDSG 255
TLLS++V LAV TL+FW + R + + +VLL+GL DSG
Sbjct: 36 TLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSG 76
>AK027525-1|BAB55176.1| 271|Homo sapiens protein ( Homo sapiens
cDNA FLJ14619 fis, clone NT2RP1001569, highly similar to
SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT. ).
Length = 271
Score = 62.9 bits (146), Expect = 1e-09
Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +3
Query: 258 TLXFVXLAYSQYXQTFTSMKENIEXXITSNK---TLKIVDLPGXERLRNKFFXQHXSSAK 428
TL FV L Y T TS+ ++ +N +L ++DLPG E LR +F + SSA
Sbjct: 78 TLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSAG 137
Query: 429 GIVFVIXSINIXEEIXDVAXYLYTILWIRSFXGTQLPX*YCG-NKQXQP*PKXAQLSKGY 605
IVFV+ S E+ DVA +LY +L I S P NKQ K A+L +
Sbjct: 138 AIVFVVDSAAFQREVKDVAEFLYQVL-IDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQ 196
Query: 606 SEKEL 620
EKEL
Sbjct: 197 LEKEL 201
Score = 35.9 bits (79), Expect = 0.17
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Frame = +1
Query: 145 TLLSLIV--LAV--TLIFWWIFSRRYTLRNSVLLMGLSDSG 255
TLLS++V LAV TL+FW + R + + +VLL+GL DSG
Sbjct: 36 TLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSG 76
>CR457225-1|CAG33506.1| 204|Homo sapiens ARFRP2 protein.
Length = 204
Score = 33.1 bits (72), Expect = 1.2
Identities = 22/91 (24%), Positives = 43/91 (47%)
Frame = +3
Query: 345 NKTLKIVDLPGXERLRNKFFXQHXSSAKGIVFVIXSINIXEEIXDVAXYLYTILWIRSFX 524
N L + +L G + +R K++ ++ ++G++FV+ S + +++ L++ L
Sbjct: 75 NAILNVKELGGADNIR-KYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQL- 132
Query: 525 GTQLPX*YCGNKQXQP*PKXAQLSKGYSEKE 617
LP N Q +P + Q K Y E E
Sbjct: 133 -CTLPFLILANHQDKPAARSVQEIKKYFELE 162
>BC026093-1|AAH26093.1| 204|Homo sapiens ADP-ribosylation
factor-like 15 protein.
Length = 204
Score = 33.1 bits (72), Expect = 1.2
Identities = 22/91 (24%), Positives = 43/91 (47%)
Frame = +3
Query: 345 NKTLKIVDLPGXERLRNKFFXQHXSSAKGIVFVIXSINIXEEIXDVAXYLYTILWIRSFX 524
N L + +L G + +R K++ ++ ++G++FV+ S + +++ L++ L
Sbjct: 75 NAILNVKELGGADNIR-KYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQL- 132
Query: 525 GTQLPX*YCGNKQXQP*PKXAQLSKGYSEKE 617
LP N Q +P + Q K Y E E
Sbjct: 133 -CTLPFLILANHQDKPAARSVQEIKKYFELE 162
>AK000058-1|BAA90915.1| 204|Homo sapiens protein ( Homo sapiens
cDNA FLJ20051 fis, clone COL00720. ).
Length = 204
Score = 33.1 bits (72), Expect = 1.2
Identities = 22/91 (24%), Positives = 43/91 (47%)
Frame = +3
Query: 345 NKTLKIVDLPGXERLRNKFFXQHXSSAKGIVFVIXSINIXEEIXDVAXYLYTILWIRSFX 524
N L + +L G + +R K++ ++ ++G++FV+ S + +++ L++ L
Sbjct: 75 NAILNVKELGGADNIR-KYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQL- 132
Query: 525 GTQLPX*YCGNKQXQP*PKXAQLSKGYSEKE 617
LP N Q +P + Q K Y E E
Sbjct: 133 -CTLPFLILANHQDKPAARSVQEIKKYFELE 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,601,599
Number of Sequences: 237096
Number of extensions: 1842201
Number of successful extensions: 3476
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3476
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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