Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30156.Seq
(961 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 143 2e-34
07_01_0756 + 5819367-5820038,5820847-5821005 140 1e-33
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 50 4e-06
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 41 0.001
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 5.5
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 9.6
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 28 9.6
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 143 bits (346), Expect = 2e-34
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSK 435
LP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+K
Sbjct: 70 LPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAK 128
Query: 436 EVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
EVATAIRGAIILAKLSV+ + GNKIG+PH P
Sbjct: 129 EVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVP 164
Score = 52.4 bits (120), Expect = 5e-07
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Frame = +2
Query: 161 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSR--SLISSSARP*MMRFLRSCL 334
++++++WVPVTKLGRLV+EG+ K+E IYL K + + + +M+ + +
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLVPGLKDEVMKI--TPV 95
Query: 335 YRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYGV 514
+ ++ + + V A++ + L PVRR Y
Sbjct: 96 QKQTRAGQRTRFKAFVVVGDNNGHVGLGV-KCAKEVATAIRGAIILAKLSVVPVRRGYWG 154
Query: 515 TR*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ R++PAP
Sbjct: 155 NKIGQPHTVPCKVTGKCG-SVTVRMVPAP 182
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 140 bits (340), Expect = 1e-33
Identities = 70/108 (64%), Positives = 83/108 (76%)
Frame = +1
Query: 220 KNRQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 399
K + E L LP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 400 NGHIGLGVKCSKEVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
+GH+GLGVKC+KEVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 167
Score = 51.2 bits (117), Expect = 1e-06
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
Frame = +2
Query: 161 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSRSL--ISSSARP*MMRFLRSCL 334
++++++WVPVTKLGRLV+E KI K+E IYL K + + + + +M+ + +
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLVPGLKDEVMKI--TPV 98
Query: 335 YRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYGV 514
+ ++ + + V A++ + L PVRR Y
Sbjct: 99 QKQTRAGQRTRFKAFVVVGDGDGHVGLGV-KCAKEVATAIRGAIILAKLSVVPVRRGYWG 157
Query: 515 TR*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ R++PAP
Sbjct: 158 NKIGKPHTVPCKVTGKCG-SVTVRMVPAP 185
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 49.6 bits (113), Expect = 4e-06
Identities = 22/64 (34%), Positives = 40/64 (62%)
Frame = +1
Query: 307 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 486
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 487 LTSP 498
+T P
Sbjct: 231 VTVP 234
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1
Query: 379 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 474
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 5.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 441 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 325
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 116 DRHGLYLHRVIRIRRENRHVHRLEQRPP 33
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 28.3 bits (60), Expect = 9.6
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 503 SYGVTR*ESHTTVPCKVXGQXWF--PKQFRLIPAPSVGNW*LCSCXKFPKESFLSDGLGV 676
S +TR S T PC+V G +F P +LI + S F K S+ LG
Sbjct: 127 SISITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGAD---TSEEVFTKVKSFSERLGK 183
Query: 677 TXICXQRSSFXGF 715
T IC Q + GF
Sbjct: 184 TVICSQ--DYPGF 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,838,784
Number of Sequences: 37544
Number of extensions: 460635
Number of successful extensions: 1127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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