Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30156.Seq
(961 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml prot... 172 7e-43
U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal prot... 172 7e-43
U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal prot... 172 7e-43
AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p pro... 172 7e-43
AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA... 172 7e-43
BT029103-1|ABJ17036.1| 823|Drosophila melanogaster IP14290p pro... 30 4.1
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA... 30 4.1
AE014134-733|AAO41157.1| 579|Drosophila melanogaster CG33003-PA... 30 5.4
AE014297-756|AAF54239.3| 1052|Drosophila melanogaster CG31462-PA... 29 7.2
>X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml protein
S2 protein.
Length = 267
Score = 172 bits (418), Expect = 7e-43
Identities = 87/108 (80%), Positives = 90/108 (83%)
Frame = +1
Query: 220 KNRQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 399
K + E L LPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 400 NGHIGLGVKCSKEVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
NGHIGLGVKCSKEVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 164
Score = 65.3 bits (152), Expect = 1e-10
Identities = 50/150 (33%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Frame = +2
Query: 161 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSRSL---ISSSARP*MMRFLRSC 331
KED KEWVPVTKLGRLVREGKI LE IYL+ K + + SS + +++ +
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMP-- 94
Query: 332 LYRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYG 511
+ + + I + V +++ + L PVRR Y
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYW 153
Query: 512 VTR*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ RLIPAP
Sbjct: 154 GNKIGKPHTVPCKVTGKCG-SVSVRLIPAP 182
>U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 172 bits (418), Expect = 7e-43
Identities = 87/108 (80%), Positives = 90/108 (83%)
Frame = +1
Query: 220 KNRQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 399
K + E L LPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 400 NGHIGLGVKCSKEVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
NGHIGLGVKCSKEVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 164
Score = 65.3 bits (152), Expect = 1e-10
Identities = 50/150 (33%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Frame = +2
Query: 161 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSRSL---ISSSARP*MMRFLRSC 331
KED KEWVPVTKLGRLVREGKI LE IYL+ K + + SS + +++ +
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMP-- 94
Query: 332 LYRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYG 511
+ + + I + V +++ + L PVRR Y
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYW 153
Query: 512 VTR*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ RLIPAP
Sbjct: 154 GNKIGKPHTVPCKVTGKCG-SVSVRLIPAP 182
>U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 172 bits (418), Expect = 7e-43
Identities = 87/108 (80%), Positives = 90/108 (83%)
Frame = +1
Query: 220 KNRQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 399
K + E L LPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 400 NGHIGLGVKCSKEVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
NGHIGLGVKCSKEVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 164
Score = 65.3 bits (152), Expect = 1e-10
Identities = 50/150 (33%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Frame = +2
Query: 161 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSRSL---ISSSARP*MMRFLRSC 331
KED KEWVPVTKLGRLVREGKI LE IYL+ K + + SS + +++ +
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMP-- 94
Query: 332 LYRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYG 511
+ + + I + V +++ + L PVRR Y
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYW 153
Query: 512 VTR*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ RLIPAP
Sbjct: 154 GNKIGKPHTVPCKVTGKCG-SVSVRLIPAP 182
>AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p
protein.
Length = 267
Score = 172 bits (418), Expect = 7e-43
Identities = 87/108 (80%), Positives = 90/108 (83%)
Frame = +1
Query: 220 KNRQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 399
K + E L LPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 400 NGHIGLGVKCSKEVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
NGHIGLGVKCSKEVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 164
Score = 65.3 bits (152), Expect = 1e-10
Identities = 50/150 (33%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Frame = +2
Query: 161 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSRSL---ISSSARP*MMRFLRSC 331
KED KEWVPVTKLGRLVREGKI LE IYL+ K + + SS + +++ +
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMP-- 94
Query: 332 LYRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYG 511
+ + + I + V +++ + L PVRR Y
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYW 153
Query: 512 VTR*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ RLIPAP
Sbjct: 154 GNKIGKPHTVPCKVTGKCG-SVSVRLIPAP 182
>AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA
protein.
Length = 267
Score = 172 bits (418), Expect = 7e-43
Identities = 87/108 (80%), Positives = 90/108 (83%)
Frame = +1
Query: 220 KNRQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 399
K + E L LPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 400 NGHIGLGVKCSKEVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
NGHIGLGVKCSKEVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 164
Score = 65.3 bits (152), Expect = 1e-10
Identities = 50/150 (33%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Frame = +2
Query: 161 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSRSL---ISSSARP*MMRFLRSC 331
KED KEWVPVTKLGRLVREGKI LE IYL+ K + + SS + +++ +
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMP-- 94
Query: 332 LYRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYG 511
+ + + I + V +++ + L PVRR Y
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYW 153
Query: 512 VTR*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ RLIPAP
Sbjct: 154 GNKIGKPHTVPCKVTGKCG-SVSVRLIPAP 182
>BT029103-1|ABJ17036.1| 823|Drosophila melanogaster IP14290p
protein.
Length = 823
Score = 30.3 bits (65), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 167 LPCRAHDHGRDHDRVHEDRHGLYLHRVIRIRREN-RHVHRLEQRPPLLN 24
L C H D R+H + GL + V+ + REN VH + ++ LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407
>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
protein.
Length = 1958
Score = 30.3 bits (65), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 167 LPCRAHDHGRDHDRVHEDRHGLYLHRVIRIRREN-RHVHRLEQRPPLLN 24
L C H D R+H + GL + V+ + REN VH + ++ LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373
>AE014134-733|AAO41157.1| 579|Drosophila melanogaster CG33003-PA
protein.
Length = 579
Score = 29.9 bits (64), Expect = 5.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 152 HDHGRDHDRVHEDRHGLY 99
HDH DHD VH+ H Y
Sbjct: 413 HDHAPDHDHVHDHHHDHY 430
>AE014297-756|AAF54239.3| 1052|Drosophila melanogaster CG31462-PA
protein.
Length = 1052
Score = 29.5 bits (63), Expect = 7.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 154 ARQGRPERVGSCHQTRPSCSRRKNRQTREHLLVFLPIKEFEIIDF 288
AR RP+R G + +R +N + H L +P++ FE DF
Sbjct: 180 ARSSRPQRQGRGLRRLFESNRSQNPPSEHHYLHGVPVRRFERQDF 224
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,590,191
Number of Sequences: 53049
Number of extensions: 766469
Number of successful extensions: 4041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2987
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4792133502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -