Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30152.Seq
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1121 + 24457413-24457528,24458395-24458552,24458927-244590... 35 0.074
08_01_0027 - 195321-195932,197206-197415 35 0.098
08_02_1308 - 26024491-26025405 33 0.23
08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579 32 0.52
08_02_1251 - 25592537-25593380,25593589-25593893 31 0.92
05_04_0228 - 19224901-19224991,19225095-19225219,19225293-192254... 31 1.6
08_01_0657 + 5674907-5674993,5675615-5676583 30 2.8
02_04_0289 + 21615745-21616155,21617417-21617870,21618162-216182... 30 2.8
01_01_1137 + 9017211-9018584 30 2.8
12_01_0579 + 4741403-4742083 29 3.7
04_03_0584 + 17546945-17547382 29 3.7
12_01_0421 - 3321590-3323692 29 6.5
02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270 29 6.5
02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876 29 6.5
11_06_0463 + 23879587-23879771,23879783-23881658 28 8.5
11_06_0416 + 23307984-23308281,23310083-23310900 28 8.5
08_02_1304 - 26008105-26009070 28 8.5
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 28 8.5
02_02_0609 + 12105616-12106336,12106514-12106646,12107849-121080... 28 8.5
>08_02_1121 +
24457413-24457528,24458395-24458552,24458927-24459042,
24459735-24460400
Length = 351
Score = 35.1 bits (77), Expect = 0.074
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +3
Query: 258 DAIVRADDGASFPVHRAILSACSPYFLALFTTTLHSREQSDVLIS 392
D + A DG S HRAIL++ SP F ++F+ L +E S V IS
Sbjct: 187 DITINATDG-SIMAHRAILASRSPVFRSMFSHDLKEKELSTVDIS 230
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 34.7 bits (76), Expect = 0.098
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 258 DAIVRADDGASFPVHRAILSACSPYFLALFTTTLHSREQSDVLIS 392
D + DG H+AIL++CSP F ++F L +E S + I+
Sbjct: 109 DVTINTTDGV-LKAHKAILASCSPVFESMFLHDLKEKESSTININ 152
>08_02_1308 - 26024491-26025405
Length = 304
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 279 DGASFPVHRAILSACSPYFLALFTTTLHSREQSDVLISGV 398
DG +FP HRA+L+A SP F A ++ + S + + +
Sbjct: 135 DGETFPAHRAVLAARSPVFRAELLGSMAESKMSSITLHDI 174
>08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579
Length = 458
Score = 32.3 bits (70), Expect = 0.52
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 279 DGASFPVHRAILSACSPYFLALFTTTLHSREQSDVLISGV 398
DG +FP HRA+L+A SP F A ++ + S + + +
Sbjct: 281 DGETFPAHRAVLAARSPVFRAELLGSMAEAKMSCITLHDI 320
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 31.5 bits (68), Expect = 0.92
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 282 GASFPVHRAILSACSPYFLALFTTTLHSREQSDVLISGVR 401
G +F HRA+L+ CSP F AL ++ + ++ ++
Sbjct: 232 GETFHAHRALLAVCSPVFKALLLSSTAEAAACSITLNDIK 271
>05_04_0228 -
19224901-19224991,19225095-19225219,19225293-19225410,
19225554-19225618,19225760-19225839,19225942-19226005,
19227341-19227480,19227571-19227694,19227781-19227840,
19227922-19227990,19228139-19228288,19229182-19229289,
19229573-19229648,19229960-19230054,19231729-19231803,
19231923-19232043,19232136-19232308,19232647-19232813,
19232944-19233301
Length = 752
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/83 (25%), Positives = 31/83 (37%)
Frame = +3
Query: 246 SSACDAIVRADDGASFPVHRAILSACSPYFLALFTTTLHSREQSDVLISGVRSXXXXXXX 425
SS + +G F HR L A S F A+F ++ D+ I +R
Sbjct: 582 SSTLSDVTFLVEGKRFYAHRIALLASSDAFRAMFDGGYREKDARDIEIPNIRWNVFELMM 641
Query: 426 XXXXXXXIDVTDTNVHELLMTAD 494
++VT +LL AD
Sbjct: 642 RFIYTGSVEVTSDISQDLLRAAD 664
>08_01_0657 + 5674907-5674993,5675615-5676583
Length = 351
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 282 GASFPVHRAILSACSPYFLALFTTTLHSREQSDVLISGV 398
G FP HRAIL++ SP F+A + + V I +
Sbjct: 193 GKCFPAHRAILASRSPVFMASLFGDMKEKSSRSVEIRDI 231
>02_04_0289 +
21615745-21616155,21617417-21617870,21618162-21618217,
21618307-21618437,21618565-21618727
Length = 404
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 147 NGKRPK*QSDGGSGNRSVHVGGSDAGA 227
+G P QSD S NR+++VGG D A
Sbjct: 291 SGSSPPRQSDSDSTNRTIYVGGLDPNA 317
>01_01_1137 + 9017211-9018584
Length = 457
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 198 VHVGGSDAGAPSTARVSSACDAIVRADDGASFPVHRAI 311
VH SD+G PS++R DA++ A DGA+ V R +
Sbjct: 163 VHYISSDSGGPSSSRCVLEVDAVIGA-DGANSRVAREV 199
>12_01_0579 + 4741403-4742083
Length = 226
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 325 LQAESIARCTGKEAPSSARTIASQADDTRAVD 230
LQAE+ R T +E PS+A + ++ DD + D
Sbjct: 129 LQAETRRRATPEEEPSTAAVVVTEEDDEESDD 160
>04_03_0584 + 17546945-17547382
Length = 145
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = +3
Query: 135 NAQRNGKRPK*QSDGGSGNRSVHVGGSDAGAPSTARVSSACD----AIVRADDGASFP 296
NA+R G R ++ G G R GG A P + V+ A A DDG + P
Sbjct: 34 NARRRGLRTNQRAGRGGGRRGDAEGGDGAAGPHLSGVAGAAGGSTVAATPLDDGGNAP 91
>12_01_0421 - 3321590-3323692
Length = 700
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 177 GGSGNRSVHVGGSDAGAPSTARVSSACDAIVRA-DDG 284
GG G GG D G P A +S DA V A DG
Sbjct: 92 GGDGGGGGDGGGGDGGVPDLAALSVEIDAFVAAGQDG 128
>02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270
Length = 248
Score = 28.7 bits (61), Expect = 6.5
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = -1
Query: 340 ARKYGLQAESIARCTGKEAPSSARTIASQADDT----RAVDGAPASLPPTCTDRFPDPPS 173
AR A A +G SAR I +D T RA A A + P P PP+
Sbjct: 2 ARHSAFFASRAACPSGSAGEFSARRICLYSDSTTGRLRARSSAVAQIIPPPAFAIPPPPT 61
Query: 172 DCYLGRFPFLCAFR 131
LGR CA +
Sbjct: 62 QWPLGREAEACALQ 75
>02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876
Length = 250
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 171 SDGGSGNRSVHVGGSDAGAPSTARVSSACDAIVR 272
S GG GNR+ G D+G P + D +V+
Sbjct: 115 SGGGGGNRNRRGGSGDSGGPEDESFKESLDELVQ 148
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 243 VSSACDAIVRAD-DGASFPVHRAILSACSPYFLALFTTTLHSR 368
++S A VR + DG +F HR IL+A SP F A ++ R
Sbjct: 507 LASEAAADVRFNVDGEAFAAHRCILAARSPVFRAELFGSMRER 549
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 282 GASFPVHRAILSACSPYFLA-LFTTTLHSREQSDVLI 389
G +F HR +L+A SP F+A LF SR ++ I
Sbjct: 209 GETFAAHRCVLAARSPVFMAELFGPMAMSRHNNEETI 245
>08_02_1304 - 26008105-26009070
Length = 321
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 210 GSDAGAPSTARVSSACDAIV-RADDGASFPVHRAILSACSPYFLA 341
G D A + + S A+V A G +F HRA+L+A SP F A
Sbjct: 137 GDDHVAVPPSNLGSQLAAMVGSAVGGETFHAHRAVLAARSPVFRA 181
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 279 DGASFPVHRAILSACSPYFLALFTTTLHSREQSDVLISGVRS 404
DG FP H+ +L+A SP F A + + + I + +
Sbjct: 318 DGEVFPAHKVVLAARSPVFRAQLFGPMKDKNMKRITIEDMEA 359
>02_02_0609 +
12105616-12106336,12106514-12106646,12107849-12108048,
12108184-12108635,12109018-12109323
Length = 603
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 156 RPK*QSDGGSGNRSVHVGGSDAGAPSTARVSS 251
R K ++DG SG+ +VGGS G T SS
Sbjct: 555 RRKRENDGSSGSNRKNVGGSSGGKKKTVGGSS 586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,190,676
Number of Sequences: 37544
Number of extensions: 506289
Number of successful extensions: 1696
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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