Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30150.Seq
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.0  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 316 NWAGSFNGNRWWCMRXXRRHQKLH 245
           NW G F G+  W  R  R+   LH
Sbjct: 163 NWVGVFGGSA-WSWREERQAYYLH 185


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 492 HSTPATSHSLAIPD 533
           H +P+ +HS A+PD
Sbjct: 632 HQSPSQNHSSAVPD 645


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 316 NWAGSFNGNRWWCMRXXRRHQKLH 245
           NW G F G+  W  R  R+   LH
Sbjct: 163 NWVGVFGGSA-WSWREERQAYYLH 185


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 310 PSLGHRTGLKSGSSS 354
           PS+ +R+GL SGSS+
Sbjct: 381 PSIRNRSGLVSGSST 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,588
Number of Sequences: 438
Number of extensions: 3664
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)