Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30148.Seq
(812 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069481-1|AAL39626.1| 390|Drosophila melanogaster LD21662p pro... 30 3.3
AE014296-1620|AAF50294.1| 390|Drosophila melanogaster CG4452-PA... 30 3.3
M74078-1|AAA28498.1| 878|Drosophila melanogaster ecdysone recep... 29 5.7
BT015234-1|AAT94463.1| 878|Drosophila melanogaster RE06878p pro... 29 5.7
BT012469-1|AAS93740.1| 878|Drosophila melanogaster RE33854p pro... 29 5.7
AY075461-1|AAL68274.1| 872|Drosophila melanogaster RE16656p pro... 29 5.7
AE013599-153|AAF57280.2| 878|Drosophila melanogaster CG1765-PB,... 29 5.7
AE013599-152|AAM68347.1| 669|Drosophila melanogaster CG1765-PC,... 29 5.7
AE013599-151|AAM68346.1| 849|Drosophila melanogaster CG1765-PE,... 29 5.7
AE013599-150|AAG22334.2| 849|Drosophila melanogaster CG1765-PD,... 29 5.7
AE013599-149|AAF57278.3| 849|Drosophila melanogaster CG1765-PA,... 29 5.7
>AY069481-1|AAL39626.1| 390|Drosophila melanogaster LD21662p
protein.
Length = 390
Score = 30.3 bits (65), Expect = 3.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 640 SGRFLFRCCLRFSCYFGSSCHSGACVCRGCSG 545
SG+ LF C FS + SG +C+GC G
Sbjct: 2 SGKVLFACSKCFSRHLYEELSSGQQLCKGCRG 33
>AE014296-1620|AAF50294.1| 390|Drosophila melanogaster CG4452-PA,
isoform A protein.
Length = 390
Score = 30.3 bits (65), Expect = 3.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 640 SGRFLFRCCLRFSCYFGSSCHSGACVCRGCSG 545
SG+ LF C FS + SG +C+GC G
Sbjct: 2 SGKVLFACSKCFSRHLYEELSSGQQLCKGCRG 33
>M74078-1|AAA28498.1| 878|Drosophila melanogaster ecdysone receptor
protein.
Length = 878
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRKY 488
S H A C GC G F RRS+T S C K+
Sbjct: 272 SGYHYNALTCEGCKG---FFRRSVTKSAVYCCKF 302
>BT015234-1|AAT94463.1| 878|Drosophila melanogaster RE06878p
protein.
Length = 878
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRKY 488
S H A C GC G F RRS+T S C K+
Sbjct: 272 SGYHYNALTCEGCKG---FFRRSVTKSAVYCCKF 302
>BT012469-1|AAS93740.1| 878|Drosophila melanogaster RE33854p
protein.
Length = 878
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRKY 488
S H A C GC G F RRS+T S C K+
Sbjct: 272 SGYHYNALTCEGCKG---FFRRSVTKSAVYCCKF 302
>AY075461-1|AAL68274.1| 872|Drosophila melanogaster RE16656p
protein.
Length = 872
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRKY 488
S H A C GC G F RRS+T S C K+
Sbjct: 243 SGYHYNALTCEGCKG---FFRRSVTKSAVYCCKF 273
>AE013599-153|AAF57280.2| 878|Drosophila melanogaster CG1765-PB,
isoform B protein.
Length = 878
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRKY 488
S H A C GC G F RRS+T S C K+
Sbjct: 272 SGYHYNALTCEGCKG---FFRRSVTKSAVYCCKF 302
>AE013599-152|AAM68347.1| 669|Drosophila melanogaster CG1765-PC,
isoform C protein.
Length = 669
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRKY 488
S H A C GC G F RRS+T S C K+
Sbjct: 63 SGYHYNALTCEGCKG---FFRRSVTKSAVYCCKF 93
>AE013599-151|AAM68346.1| 849|Drosophila melanogaster CG1765-PE,
isoform E protein.
Length = 849
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRKY 488
S H A C GC G F RRS+T S C K+
Sbjct: 243 SGYHYNALTCEGCKG---FFRRSVTKSAVYCCKF 273
>AE013599-150|AAG22334.2| 849|Drosophila melanogaster CG1765-PD,
isoform D protein.
Length = 849
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRKY 488
S H A C GC G F RRS+T S C K+
Sbjct: 243 SGYHYNALTCEGCKG---FFRRSVTKSAVYCCKF 273
>AE013599-149|AAF57278.3| 849|Drosophila melanogaster CG1765-PA,
isoform A protein.
Length = 849
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRKY 488
S H A C GC G F RRS+T S C K+
Sbjct: 243 SGYHYNALTCEGCKG---FFRRSVTKSAVYCCKF 273
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,209,875
Number of Sequences: 53049
Number of extensions: 618862
Number of successful extensions: 1657
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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