Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30148.Seq
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.63 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         25   0.83 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   1.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   1.1  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   3.4  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.8  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   7.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 589 SSCHSGACVCRGCSGYGGF*RRSLT-SSTFACR 494
           S  H  A  C GC    GF RRS+T ++ + C+
Sbjct: 195 SGYHYNALTCEGCK---GFFRRSITKNAVYQCK 224


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 592 GSSCHSGACVCR 557
           G SC +G C+CR
Sbjct: 92  GGSCRNGVCICR 103


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRK 491
           S  H G   C GC G+  F R      ++ACR+
Sbjct: 118 SGKHYGVYSCEGCKGF--FKRTVRKDLSYACRE 148


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRK 491
           S  H G   C GC G+  F R      ++ACR+
Sbjct: 118 SGKHYGVYSCEGCKGF--FKRTVRKDLSYACRE 148


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 592 GSSCHSGACVCRGCS 548
           G  C  G C+CR  S
Sbjct: 71  GGHCEKGVCICRKTS 85


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 592 GSSCHSGACVCR 557
           G  C  G C+CR
Sbjct: 46  GGHCEKGVCICR 57


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 386 VRSGNKVSVCLSRIKFHCNSGLDV 315
           + SGNK+S+  S+     NS  +V
Sbjct: 550 INSGNKISLATSKSFIKANSQTEV 573


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 553 CSGYGGF*RRSLT-SSTFACR 494
           C G  GF RRS+T ++ + C+
Sbjct: 1   CEGCKGFFRRSITKNAVYQCK 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,576
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)