Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30147.Seq
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 266 2e-71
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 266 2e-71
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 2e-49
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 155 4e-38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 4e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 134 6e-32
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 134 6e-32
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 118 4e-27
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 3e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 3e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 67 2e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 67 2e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 67 2e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 41 0.001
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.088
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.12
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 34 0.15
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.15
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.20
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.36
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.36
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 32 0.62
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 32 0.62
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 1.1
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 1.1
AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical ... 30 1.9
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 3.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 3.3
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 29 4.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 5.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 266 bits (651), Expect = 2e-71
Identities = 128/195 (65%), Positives = 145/195 (74%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 436 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVP 615
TREHALLA TLGVKQLIV NKMDS + + +++GYNP AV FVP
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVP 192
Query: 616 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPLTSPCVFPARR 795
ISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RP P P +
Sbjct: 193 ISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQD 252
Query: 796 IXNSVVXVPCPSGRI 840
+ P GR+
Sbjct: 253 VYKIGGIGTVPVGRV 267
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERE 245
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 266 bits (651), Expect = 2e-71
Identities = 128/195 (65%), Positives = 145/195 (74%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 436 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVP 615
TREHALLA TLGVKQLIV NKMDS + + +++GYNP AV FVP
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVP 192
Query: 616 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPLTSPCVFPARR 795
ISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RP P P +
Sbjct: 193 ISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQD 252
Query: 796 IXNSVVXVPCPSGRI 840
+ P GR+
Sbjct: 253 VYKIGGIGTVPVGRV 267
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERE 245
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERE 245
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 118 bits (283), Expect(2) = 2e-49
Identities = 57/120 (47%), Positives = 72/120 (60%)
Frame = +1
Query: 481 LIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVPISGWHGDNMLEPSTK 660
L+V NKMDS + + +++GYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 661 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPLTSPCVFPARRIXNSVVXVPCPSGRI 840
MPWFKGW VERKEG A GK L+EALD+I+PP RP P P + + P GR+
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233
Score = 96.3 bits (229), Expect(2) = 2e-49
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 390
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 155 bits (376), Expect = 4e-38
Identities = 80/100 (80%), Positives = 84/100 (84%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 436 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRR 555
TREHALLA TLGVKQL+ SL T SPD SRR
Sbjct: 133 TREHALLAQTLGVKQLV-------SLRSPTRSPD--SSRR 163
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERE 245
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/43 (48%), Positives = 23/43 (53%)
Frame = +2
Query: 623 DGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCH 751
D TETTC C GSRDG + RK L E S +L PS H
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSH 220
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 4e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAER 242
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 134 bits (325), Expect = 6e-32
Identities = 74/173 (42%), Positives = 105/173 (60%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 236 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 295
Query: 436 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVP 615
T+EHALL +LGV QLIV VNK+D+++ D K+ +R+ G++ FVP
Sbjct: 296 TKEHALLLRSLGVTQLIVAVNKLDTVDWSQDRFDEIKNNLSV-FLTRQAGFSKP--KFVP 352
Query: 616 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPLTSP 774
+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P P
Sbjct: 353 VSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGP 392
Score = 83.0 bits (196), Expect = 3e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 51 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 230
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 231 KAERE 245
+ ERE
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 134 bits (325), Expect = 6e-32
Identities = 74/173 (42%), Positives = 105/173 (60%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 254 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 313
Query: 436 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVP 615
T+EHALL +LGV QLIV VNK+D+++ D K+ +R+ G++ FVP
Sbjct: 314 TKEHALLLRSLGVTQLIVAVNKLDTVDWSQDRFDEIKNNLSV-FLTRQAGFSKP--KFVP 370
Query: 616 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPLTSP 774
+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P P
Sbjct: 371 VSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGP 410
Score = 83.0 bits (196), Expect = 3e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 51 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 230
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 231 KAERE 245
+ ERE
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 118 bits (285), Expect = 4e-27
Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 1/166 (0%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQ
Sbjct: 175 VEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQ 234
Query: 436 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLGYNPAA-VAFV 612
TREH++L T GVK L++ VNKMD ++ K R+LG+NP + +V
Sbjct: 235 TREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYV 294
Query: 613 PISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 750
P SG G + + T W G C IE +D +LP
Sbjct: 295 PCSGLTGAFIKDRPTGSE--GNWY--------SGPCFIEFIDVLLP 330
Score = 79.0 bits (186), Expect = 4e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +3
Query: 45 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 224
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 225 KLKAERE 245
ERE
Sbjct: 164 TNDEERE 170
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 69.3 bits (162), Expect = 3e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 436 TREHALLAFTLGVKQLIVGVNKMD 507
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 54 KTHINIVVIGHVDSGKSTTT 113
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 69.3 bits (162), Expect = 3e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 436 TREHALLAFTLGVKQLIVGVNKMD 507
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 54 KTHINIVVIGHVDSGKSTTT 113
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.9 bits (156), Expect = 2e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +1
Query: 274 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 453
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 454 LAFTLGV--KQLIVGVNKMDSL 513
LA +GV ++V +NK+D +
Sbjct: 159 LARQVGVPLDNIVVFMNKVDEV 180
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 218
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 219 LDKLKAER 242
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.9 bits (156), Expect = 2e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +1
Query: 274 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 453
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 454 LAFTLGV--KQLIVGVNKMDSL 513
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 218
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 219 LDKLKAER 242
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.9 bits (156), Expect = 2e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +1
Query: 274 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 453
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 454 LAFTLGV--KQLIVGVNKMDSL 513
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 218
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 219 LDKLKAER 242
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 477
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 478 QLIVGVNKMDSLNHHTVSPDLRKSRR 555
++I+ +NK D +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 63 INIVVIGHVDSGKSTTT 113
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 41.1 bits (92), Expect = 0.001
Identities = 29/73 (39%), Positives = 34/73 (46%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 477
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 478 QLIVGVNKMDSLN 516
QL+V VNK+D N
Sbjct: 258 QLVVAVNKIDKPN 270
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.088
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 471
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 472 VKQLIVGVNKMD 507
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 182
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGI 143
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 33.9 bits (74), Expect = 0.15
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Frame = +1
Query: 304 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 483
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 484 IVGVNKMDSLNHHTVSP-----DLRKSRRKYPHTSRRLGYNPAAVAF 609
++ +NK+D L + +P +L KS++ + +N V F
Sbjct: 605 VIALNKIDRLYEYESNPRKDVYELLKSQKPRVQAEFKERFNQIVVEF 651
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.15
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 295 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 474
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 475 KQLIVGVNKMD 507
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 500 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 372
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGID 146
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 29.1 bits (62), Expect = 4.4
Identities = 29/92 (31%), Positives = 37/92 (40%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 477
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 478 QLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTS 573
I VNKMD N T L R K H +
Sbjct: 166 PFICFVNKMDR-NGATPLKALDGLRNKLNHNA 196
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 238 SVXRYQIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
S+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 183 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 238 SVXRYQIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
S+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 58 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 18 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 128
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 18 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 128
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical
protein Y54E5A.6 protein.
Length = 436
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 781 FPARRIXNSVVXVPCPSGRI*NWCVENQVP 870
FP +R+ NSV P P + ++CVE ++P
Sbjct: 345 FPLKRLKNSVGFSPTPKMVLHDYCVETKIP 374
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 144 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 144 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 141 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREXVSNRYCSLEVRN 284
+DK ++ KE E+ K KYA KLK + + V N Y S+ +N
Sbjct: 188 LDKSRVKTASKERNELAK---KYAEQNAKLKLKLKEVKNNYASMLEKN 232
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 63 INIVVIGHVDSGKSTTT 113
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,541,035
Number of Sequences: 27780
Number of extensions: 442191
Number of successful extensions: 1346
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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