Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30146.Seq
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer ...    27   4.2  
U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer ...    27   4.2  
AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform...    27   4.2  

>U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform b protein.
          Length = 557

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 83  IYVYLNQTMSLTRYRXGPPP 142
           IY+ ++  + +TRY  GPPP
Sbjct: 79  IYIIISYFIRITRYPPGPPP 98


>U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform a protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 83  IYVYLNQTMSLTRYRXGPPP 142
           IY+ ++  + +TRY  GPPP
Sbjct: 94  IYIIISYFIRITRYPPGPPP 113


>AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform A
           protein.
          Length = 557

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 83  IYVYLNQTMSLTRYRXGPPP 142
           IY+ ++  + +TRY  GPPP
Sbjct: 79  IYIIISYFIRITRYPPGPPP 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,131,038
Number of Sequences: 27780
Number of extensions: 69670
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)