Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30146.Seq
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   5.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   6.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   8.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 200 APT*QYFAQVWQWIYTFCYN 259
           +PT +   Q+WQ I  F  N
Sbjct: 280 SPTRELTIQIWQQIVKFSLN 299


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 235 LPNLREILLGWRL 197
           +P++RE  LGW +
Sbjct: 22  VPSMREKFLGWNV 34


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 235 LPNLREILLGWRL 197
           +P++RE  LGW +
Sbjct: 22  VPSMREKFLGWNV 34


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 49  TSPPRGPQHFAYNY 8
           T PP  PQ+   N+
Sbjct: 315 TQPPSAPQNLTVNF 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,674
Number of Sequences: 438
Number of extensions: 882
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)