Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30142.Seq
         (600 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015202-1|AAH15202.2|  561|Homo sapiens CENPT protein protein.        30   7.1  
BC007642-1|AAH07642.1|  558|Homo sapiens CENPT protein protein.        30   7.1  
AK023173-1|BAB14445.1|  299|Homo sapiens protein ( Homo sapiens ...    30   7.1  

>BC015202-1|AAH15202.2|  561|Homo sapiens CENPT protein protein.
          Length = 561

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -2

Query: 596 SPLKRRHVQRDA*ERRPXPXXGTHGGGXVRDVTKIEVLPRG*TVKRTSRVRTYEH*INSP 417
           +PL+ + VQR    RRP        G  +RD+    + P    ++ T      +  + SP
Sbjct: 195 TPLQPQSVQRPGLARRPPARRAVDVGAFLRDLRDTSLAPPNIVLEDTQPFS--QPMVGSP 252

Query: 416 GIYVSLVC 393
            +Y SL C
Sbjct: 253 NVYHSLPC 260


>BC007642-1|AAH07642.1|  558|Homo sapiens CENPT protein protein.
          Length = 558

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -2

Query: 596 SPLKRRHVQRDA*ERRPXPXXGTHGGGXVRDVTKIEVLPRG*TVKRTSRVRTYEH*INSP 417
           +PL+ + VQR    RRP        G  +RD+    + P    ++ T      +  + SP
Sbjct: 192 TPLQPQSVQRPGLARRPPARRAVDVGAFLRDLRDTSLAPPNIVLEDTQPFS--QPMVGSP 249

Query: 416 GIYVSLVC 393
            +Y SL C
Sbjct: 250 NVYHSLPC 257


>AK023173-1|BAB14445.1|  299|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13111 fis, clone NT2RP3002566. ).
          Length = 299

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -2

Query: 596 SPLKRRHVQRDA*ERRPXPXXGTHGGGXVRDVTKIEVLPRG*TVKRTSRVRTYEH*INSP 417
           +PL+ + VQR    RRP        G  +RD+    + P    ++ T      +  + SP
Sbjct: 195 TPLQPQSVQRPGLARRPPARRAVDVGAFLRDLRDTSLAPPNIVLEDTQPFS--QPMVGSP 252

Query: 416 GIYVSLVC 393
            +Y SL C
Sbjct: 253 NVYHSLPC 260


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,221,785
Number of Sequences: 237096
Number of extensions: 1045646
Number of successful extensions: 1089
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)