Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30142.Seq
(600 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 24 0.99
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 24 0.99
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 24 1.3
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 24 1.3
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 24 1.3
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 24 1.3
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 5.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 7.0
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 9.2
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 21 9.2
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 21 9.2
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 21 9.2
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 9.2
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.2 bits (50), Expect = 0.99
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 355 NSLQNYVC*NNKYIHTYKENNFDD 284
+SL N NN Y + Y NN+++
Sbjct: 82 SSLSNNTIHNNNYKYNYNNNNYNN 105
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.2 bits (50), Expect = 0.99
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 355 NSLQNYVC*NNKYIHTYKENNFDD 284
+SL N NN Y + Y NN+++
Sbjct: 82 SSLSNNTIHNNNYKYNYNNNNYNN 105
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 355 NSLQNYVC*NNKYIHTYKENNFD 287
+SL N NN Y + Y NN++
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYN 105
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 355 NSLQNYVC*NNKYIHTYKENNFD 287
+SL N NN Y + Y NN++
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYN 105
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 355 NSLQNYVC*NNKYIHTYKENNFD 287
+SL N NN Y + Y NN++
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYN 105
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 355 NSLQNYVC*NNKYIHTYKENNFD 287
+SL N NN Y + Y NN++
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYN 105
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 380 KIYIYTLTRHIYRGN*FNVHKFSHVRFV 463
K YIYT+ ++ + F+VH R++
Sbjct: 44 KAYIYTIKSNMAKTLQFDVHMMLQFRYL 71
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 7.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 69 FNHYTSFY*ANYLSLHYSL 125
+N+Y + Y NY L+Y++
Sbjct: 337 YNNYNNNYNNNYKKLYYNI 355
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -3
Query: 328 NNKYIHTYKENNFDD 284
NN Y + Y NN+++
Sbjct: 93 NNNYKYNYNNNNYNN 107
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -3
Query: 328 NNKYIHTYKENNFDD 284
NN Y + Y NN+++
Sbjct: 93 NNNYKYNYNNNNYNN 107
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -3
Query: 328 NNKYIHTYKENNFDD 284
NN Y + Y NN+++
Sbjct: 93 NNNYKYNYNNNNYNN 107
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -3
Query: 328 NNKYIHTYKENNFDD 284
NN Y + Y NN+++
Sbjct: 93 NNNYKYNYNNNNYNN 107
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -3
Query: 328 NNKYIHTYKENNFDD 284
NN Y + Y NN+++
Sbjct: 326 NNNYKYNYNNNNYNN 340
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,105
Number of Sequences: 438
Number of extensions: 2685
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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