Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30141.Seq
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.29
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 29 0.90
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 29 0.90
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 28 2.1
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 28 2.1
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 3.6
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 27 3.6
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 6.3
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 6.3
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 30.7 bits (66), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -3
Query: 394 LPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITS 254
L R S + SSSS H + P T S +P + ST S G +VIT+
Sbjct: 48 LYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITA 94
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 29.1 bits (62), Expect = 0.90
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 329 RPVQDHERRRTSHNCLRAVPGQDRQRD-*DDCPANVGGSFASYSRN 463
+PV +H+ ++TS VPG R +D DCP++ F S N
Sbjct: 218 QPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHLASSN 263
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.90
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 125 MLPILNPFTVTFTIHTLHFTTKTITNLFNLPKN 27
+L + NP + + +H TT I NLFN+P N
Sbjct: 734 LLNLENPISGSQGLHYKRLTTDMIHNLFNVPSN 766
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 299 GRFNVLAHRVQCHHFRDIRWTSVTRHQAHAHPPTMVRFVVG-PKQPPETIS 150
GR N++ + + HHFR + V + PPT +F V + P TIS
Sbjct: 557 GRTNIMLYTERAHHFRRFDFRGVKAVVMYG-PPTNPQFYVELVRMPMRTIS 606
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 511 QPANWSLSLYTSSTVRVPRIARK*PSNVCRTV--ILISLTVLPRNCSQAVV 365
QP + L L+TS T P++ N+CR++ I S + PR+ S V+
Sbjct: 159 QPDDVMLVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVVM 209
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 637 TLAVANFPKLAQILDIVVDVLNREGQNLDSHSSDVRRS 524
T++ N PK LD V + N+EG L S +++VR +
Sbjct: 49 TVSSTNVPKKRHALDDVSNFHNKEGVPLASKNTNVRHT 86
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 655 RSASLFTLAVANFPKLAQILDIVVDVLNREGQNLDSHSSD 536
RS ++L + + KL DI+V+ + R+G L SHS D
Sbjct: 269 RSEQAYSLRLHWYGKLTPKTDIIVERMVRQGSTL-SHSED 307
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 601 ILDIVVDVLNREGQNLDSHSSDVRRSHFAYQ-PANWSLSLYTSSTVRVPRIARK 443
ILD + L + N D +S ++ RS AY +W L + + V R+ R+
Sbjct: 245 ILDPISTCLYLDNSNFDLYSQNLERSEQAYSLRLHWYGKLTPKTDIIVERMVRQ 298
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 243 TYIPEVMTLNPMCEYVET 296
TY+P MTLNPM Y+ +
Sbjct: 1060 TYMPVPMTLNPMESYINS 1077
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 6.3
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -3
Query: 661 HGRSASLFTLAVANFPKLAQILDIVVDVLNREGQNLDSHSSDVRRSHFAYQPANWSLSLY 482
H +S S T A K + D V D ++ + DS S+ +RRS + +P N++ S
Sbjct: 98 HKKSTSTSTRKRARSSK-KKATDSVSDKIDESVASYDS-STHLRRSSRSKKPVNYNSSSE 155
Query: 481 TSSTVRVPRIARK 443
+ S ++ + +K
Sbjct: 156 SESEEQISKATKK 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,933,584
Number of Sequences: 5004
Number of extensions: 86982
Number of successful extensions: 255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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