Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30141.Seq
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 31 1.2
06_02_0109 - 11919279-11920109 30 2.2
04_04_0042 + 22328464-22329858 30 2.2
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 29 3.8
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 29 5.0
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 6.6
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 28 8.8
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613... 28 8.8
05_04_0302 - 20004802-20005360,20005412-20005623 28 8.8
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -1
Query: 693 PNTSISVSQSDTDVQRPSSRWPLRTSPSWPRYWTSS*TSLIVKDRISIPILPTSGAATSR 514
PN S S+S S + P P ++PS+P ++ V DR P P+ A +
Sbjct: 114 PNPSPSISPSSSFHHHPEPPSPSPSAPSYPSI-ADGLANMHVSDRHDYPPPPSPAAVPAA 172
Query: 513 TNPRIGP 493
++P + P
Sbjct: 173 SSPSVLP 179
>06_02_0109 - 11919279-11920109
Length = 276
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = -2
Query: 338 ALGDSGHRERHSLGRFNVLAHRV-----QCHHFRDIRWTSVTR--HQAHAHPPTMV 192
AL D G + L HR+ Q HH+ + ++ R AHA PPTMV
Sbjct: 69 ALDDISRSPDKKPGELHALDHRISSILQQYHHYNHVASNNIHRDYRDAHAPPPTMV 124
>04_04_0042 + 22328464-22329858
Length = 464
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 630 PLRTSPSWPRYWTSS*TSLIVKDR-ISIPILPTSGAATSRTNPRIGP 493
P+R P +P Y+ + L++ DR +S+P T+ A + T P P
Sbjct: 269 PMRRDPRYPSYYYLNLDGLLIGDRAMSLPPTTTTTATATATAPAPAP 315
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +1
Query: 64 VVKCSVCIVKVTVKGFKMGNIHTVGPNEAL--IVSGGCFGPTTKRTIVGGWAWAW 222
VV + +V K + GN TV P + SG GP+ R + W W +
Sbjct: 161 VVMITAYLVSFVPKKYNKGNSITVSPRSQVSRTSSGAASGPSESRDLGQVWGWGY 215
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 458 RNSYSRRGVQRQGPIRGLVREVAAPD 535
R + +RRG +R G +R EVAAPD
Sbjct: 25 RGALARRGSRRLGVVRAASAEVAAPD 50
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 176 PKQPPETISASLGPTVWMLPILNPFTVTF 90
PK P T + L P VW L + NP+ +F
Sbjct: 442 PKDNPYTDDSDLEPEVWALGLRNPWRCSF 470
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 52 VIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEAL 153
V++ +KC C+ K+ + F GN+ + N +L
Sbjct: 255 VVIDFIKCFPCVEKLYIVAFNQGNLKNIRRNVSL 288
>05_07_0095 -
27659944-27660795,27660900-27661172,27661280-27661354,
27661683-27661837,27661935-27662051,27662148-27662487
Length = 603
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 551 IEILSFTIKDVYDDVQYLGQLGEVRNGQREEG-R*TSVSLWLTEMLVLGKRX*EKRNGR 724
+E L+FT+ +DV + L + N + +E R S+S + T+ +V+ + +R GR
Sbjct: 475 LESLAFTVMSRIEDVLHADSLAQASNTRTQESMRMASLSRYDTDKVVIDAKAEVERLGR 533
>05_04_0302 - 20004802-20005360,20005412-20005623
Length = 256
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 657 DVQRPSSRWPLRTSPSWPR 601
D RPSSRW R S SW R
Sbjct: 76 DRDRPSSRWRWRYSSSWQR 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,526,638
Number of Sequences: 37544
Number of extensions: 619758
Number of successful extensions: 1938
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1934
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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