Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30141.Seq
(897 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 5e-35
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0) 58 7e-09
SB_22284| Best HMM Match : PDT (HMM E-Value=0.18) 31 1.7
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4) 29 3.9
SB_17963| Best HMM Match : RVP (HMM E-Value=0.3) 29 3.9
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 145 bits (351), Expect = 5e-35
Identities = 84/179 (46%), Positives = 103/179 (57%)
Frame = +3
Query: 255 EVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVLQTL 434
EVMTLNP CE VETAQGV +TVTGVAQ K+M E LL TACEQFLGKT ++I+ VLQTL
Sbjct: 331 EVMTLNPTCEAVETAQGVAVTVTGVAQVKVMTEPRLLKTACEQFLGKTTRQIESVVLQTL 390
Query: 435 EGHLRAILGTLTVEEVYKDRDQFAGWYAKWLRRTSEEWESRFCPSRLRTSTTMSSIWASL 614
EGHLRAILGTL+VEE+YKDR+ FA + ++ SL
Sbjct: 391 EGHLRAILGTLSVEEIYKDREAFAALVREVASPDVGRMGIEILSFTIKDIEDHVDYLNSL 450
Query: 615 GKFATANVKRDAERPCRSG*PRCWY*GSGIEKNAMDVKIFD*HPKLKDNRDSSKFQKGA 791
GK TA VKRDA+ + EK MDV +++ + D+ + QK A
Sbjct: 451 GKTQTAKVKRDADIGVAEAKRDAGIREAECEKQKMDV-VYETQTNIADSSREYQMQKAA 508
Score = 80.6 bits (190), Expect = 2e-15
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = +1
Query: 115 MGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLK 258
MGN +TVGPNEAL+VSGGC G K+T++GGWA+AW VTDVQ ISL+
Sbjct: 284 MGNCYTVGPNEALVVSGGCCGSAAKKTVIGGWAFAWACVTDVQSISLE 331
>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
Length = 393
Score = 58.4 bits (135), Expect = 7e-09
Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +3
Query: 327 VAQCKIMNED-ELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKD 491
+ Q KI ++ E+L AC+QFLGK+ ++ + L+TLEGH RAI+GT+TVE D
Sbjct: 63 ILQVKIQGQNQEMLHAACQQFLGKSAEQTRHIALETLEGHQRAIMGTMTVEVASSD 118
Score = 34.3 bits (75), Expect = 0.14
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +2
Query: 518 EVAAPDVGRMGIEILSFTIKDVYDDVQYLGQ 610
EVA+ D+ MGI I+S+TIKD+ D+ + + +
Sbjct: 113 EVASSDLVNMGISIVSYTIKDIRDEEEAIAE 143
>SB_22284| Best HMM Match : PDT (HMM E-Value=0.18)
Length = 773
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 667 ERHGRSASLFTLAVANFPKLAQILDIVVDVLNREGQNLDSHSSDVRRSHFAY 512
+ HGR+ + AN P ++ ++VD N G+ L HS +V +F+Y
Sbjct: 361 QSHGRNIYEIDVTQAN-PDQDRVNHVIVDASNSPGKILVVHSGNVMEENFSY 411
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 221 QAHAHPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPF 102
QA PPTM++ + P PP I P+V + P NPF
Sbjct: 402 QASIPPPTMIQTLPPPSVPPPPIGVPNRPSV-LYPNNNPF 440
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 737 LTPKIEGQQRLFKISERRHFDSRNLNXSLKRERAFWXYXLSSQRKI 874
+T K+E QQ++ + +RR LN L+ R F Y S Q KI
Sbjct: 2 ITEKLEKQQKMEQERKRRQKHQEYLNMILQHARDFKEYHRSVQSKI 47
>SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4)
Length = 400
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -3
Query: 616 PKLAQILDIVVDVLNREGQNLDSHSSDVRRSHFAYQPANWSLSL 485
P ++ ++VD N G+ L HS +V+ +F+Y+ ++S+
Sbjct: 197 PDQDRVNHVIVDASNSPGKILVVHSGNVKEENFSYRDKTLTISM 240
>SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)
Length = 338
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +3
Query: 219 LVSGYGRPTYIPEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMN--EDELLTTA-CEQFL 389
+ + G P ++ ++++ C + +T V + + + KI+N + E+ +TA E +
Sbjct: 213 ITTASGEPLHVHGTVSIDITCAWQDTHMNVMIPIPIILALKILNRTKSEISSTARSESYT 272
Query: 390 GKTVKEIK 413
G+T+ E++
Sbjct: 273 GQTLCELR 280
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = -2
Query: 347 HDLALGDSGHRE--RHSLGRFNVLAHRVQCH--HFRDIRWTSVTRHQAHAHPPT 198
HD L D+ E RH ++ H H H D+ TRH H H T
Sbjct: 476 HDTHLHDTHTHETTRHDTHLYDTHTHETTRHDTHLHDMHTHETTRHDTHLHDTT 529
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 94 LSRYTHCTSQLKR*QTCLIYRKINK 20
L T C S+++R Q+C++ +KINK
Sbjct: 1401 LKNITVCDSEVERQQSCMVSQKINK 1425
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +1
Query: 1 CHCCFYIY*FFGKLNKFVIVLVVKCSVC-IVKVTVKGFKMGNIHTVGPNEALIVSGGCFG 177
C CF+ Y K+NK ++ +C C + + KG + + + C
Sbjct: 773 CGQCFHPYCVGVKVNKMILSKGWRCLDCTLCEGCGKGSDEARLLLCDSCD-ISYHTYCLD 831
Query: 178 PTTKRTIVGGWAWAWCLVTD 237
P ++ GGW WC+ D
Sbjct: 832 PPLEKVPPGGWKCKWCVSCD 851
>SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 616 PKLAQILDIVVDVLNREGQNLDSHSSDVRRSHFAYQPANWSLSL 485
P ++ ++VD N G+ L HS +V+ +F+Y+ +S+
Sbjct: 221 PDQDRVNHVIVDASNSPGKILVVHSGNVKEENFSYRDKTLMISM 264
>SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 660 TDVQRPSSRWPLRTSPSWPRYWTSS*TSLIVKDRISIPIL 541
+D +P S P R SPS+ +W S SLI I P+L
Sbjct: 50 SDTFQPFSVKPRRESPSFAEHWISLLESLIRLQVIDEPVL 89
>SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 365 EKFVFVHDLALGDSGHRERHSLGRFNVL--AHRVQCHHFRDIRWTS 234
EK V L L D GHR +HSL N L H H R T+
Sbjct: 52 EKCVSALKLNLRDQGHRNKHSLSPPNALMATHNASSHESHINRTTT 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,154,734
Number of Sequences: 59808
Number of extensions: 694925
Number of successful extensions: 1948
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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