Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30139.Seq
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 51 2e-07
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 48 2e-06
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 47 3e-06
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 46 5e-06
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 43 5e-05
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 38 0.001
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 36 0.007
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 34 0.017
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 29 0.64
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 27 2.6
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 26 4.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.8
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 50.8 bits (116), Expect = 2e-07
Identities = 30/100 (30%), Positives = 44/100 (44%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFSA 491
S+ CL +F +++ L N + C CK L+ K I LP +L +HLKRF++
Sbjct: 269 SVTSCLRSFSASEMLSSKNKFHCDVCKSLQEAEKRMKIKKLPKILSLHLKRFKYNETQEG 328
Query: 492 KVXXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMG 611
T T T+ A Y L +VI H+G
Sbjct: 329 HDKLFYTIVFTNEMRLFTTTEDAENAERMYYLSSVIVHVG 368
Score = 42.3 bits (95), Expect = 6e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 40 GDGSNVKYRSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLAVLRC 210
G+ S+V + + +F G L S +CL C+ +++R E+F DLS+ I H +V C
Sbjct: 219 GNHSDVMHPKWVHSLFEGTLTSETKCLTCENITSRDESFLDLSIDI--ENHTSVTSC 273
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 47.6 bits (108), Expect = 2e-06
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
++L DCL F ++L ++ + C CK+ R K I P +L HLKRF E F
Sbjct: 825 ITLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQASKQMEIWRCPEILIFHLKRFSSERRFR 884
Query: 489 AKVXXXXXXXXTIWT*RL------TRTKSAPRXVSRYSLXAVISHMGTVGGG 626
K+ + K P+ + Y L AV +H G +GGG
Sbjct: 885 DKIDDLVEFPIDNLDMSMRTGSYKLSEKENPKLI--YELYAVDNHYGGLGGG 934
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSRE 189
S+I D+F G S + C +C+ VS + F DL+LP+P ++
Sbjct: 457 SLIVDLFQGMYRSTLVCPVCNTVSITFDPFMDLTLPLPVKQ 497
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 46.8 bits (106), Expect = 3e-06
Identities = 31/100 (31%), Positives = 41/100 (41%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFSA 491
SL D L F A++L N Y C CK+L + K I P +L +H KRF S+
Sbjct: 285 SLADSLKHFVHAEKLTKQNKYRCENCKQLVDASKQMTIYRAPNILTIHFKRFTFNGFQSS 344
Query: 492 KVXXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMG 611
K+ + L S P Y L V+ H G
Sbjct: 345 KISKQISYPESF---NLGPYMSDPNCSCWYELIGVLVHAG 381
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 46.0 bits (104), Expect = 5e-06
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Frame = +3
Query: 306 VVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLF 485
VVSLQ+CL F + + L+G + + C CK R+ K+ I LP L + ++RF+ ++
Sbjct: 265 VVSLQECLLKFSAPELLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMG 324
Query: 486 SAKVXXXXXXXXTIWT*RLT--RTKSAPRXV-SRYSLXAVISHMGTVGGG 626
K+ I + L +S + S Y+L A I H G + G
Sbjct: 325 RKKIDTPLGLSLQIPSKMLVPPSFQSGIGYIPSNYNLFAFICHYGQLENG 374
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 64 RSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLAVLR 207
+SI+ + F G+L S QC+ C R ST F L++PI H+ L+
Sbjct: 222 KSIVVNNFVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSHVVSLQ 269
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +3
Query: 294 FYGPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
F+ ++L+DCL F ++L + + C CK R K I LP +L +HL RF
Sbjct: 685 FHMESITLEDCLLEFSKPEQLDLQDSWYCPGCKAFRPATKRLEIWRLPKILVIHLNRF 742
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
SII +F G S ++C IC + ST + F L+LP+P+
Sbjct: 426 SIIVQLFQGMYKSTLECSICYQKSTAFDPFMYLTLPLPT 464
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 70 IISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
+I +F G+L S V C C+ ++ E QDLS+PI
Sbjct: 522 VIKSIFTGRLTSVVMCQSCNEITNTPEPIQDLSIPI 557
Score = 33.9 bits (74), Expect(2) = 0.001
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGV 410
+L DCL F +EL G+NM++C C N V
Sbjct: 675 TLIDCLKNFTHVEELSGENMFACENCCNQPNEV 707
Score = 23.4 bits (48), Expect(2) = 0.001
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 432 LPXVLCVHLKRFRHEL 479
LP V +HLKRF E+
Sbjct: 742 LPPVFIIHLKRFFQEI 757
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 35.5 bits (78), Expect = 0.007
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF-RHELLFS 488
+LQ CL F S ++++ YSC C +N +K LP +C+ LKRF ++ S
Sbjct: 299 TLQGCLERFVSKEKVQ----YSCHSCGS-KNAIKQLVFDKLPPTICMQLKRFEQNNFAMS 353
Query: 489 AKV 497
K+
Sbjct: 354 TKI 356
Score = 32.3 bits (70), Expect = 0.068
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 37 SGDGSNVKYRSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
SG G+++ I +F G L + V CL C + ++ D+SL I
Sbjct: 249 SGGGTSMPCTCPIHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDI 295
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 34.3 bits (75), Expect = 0.017
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 73 ISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHL 195
++D+F GK+ S V+C+ + S+R+E F D+ L + + L
Sbjct: 336 LNDIFVGKMKSYVKCIDVNYESSRVEDFWDIQLNVKGMDTL 376
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
VS+ CL A D+++ Y+C CK + + P VL + RF
Sbjct: 481 VSIDQCLDATIQPDQME----YTCEACKSKLGATTTTAMKSFPKVLILQANRF 529
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSR--CKKLRNGVKLSGIVVLPXVLCVHLKRFRHE 476
+L+D ++ + L+GDN Y ++ + GV P +L + LKRF ++
Sbjct: 358 NLEDSFRSYIQVETLEGDNCYFADTYGFQEAKKGVIFES---FPPILHLQLKRFEYD 411
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 24 KKRFIRRRQQREVPKHHIRRVRXEVTISRSVP 119
++R+IR+R+++E+ + + V TIS S P
Sbjct: 107 RRRWIRKRKKKELRRDELPLVPESFTISSSYP 138
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 334 PSSAPTNSKATTCTAAPAAR 393
PS AP NS +T AAP A+
Sbjct: 1258 PSPAPVNSATSTPVAAPTAQ 1277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,270
Number of Sequences: 5004
Number of extensions: 38378
Number of successful extensions: 114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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