Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30139.Seq
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 48 5e-06
SB_52467| Best HMM Match : UCH (HMM E-Value=2.6e-23) 48 7e-06
SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20) 46 2e-05
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 46 4e-05
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 43 2e-04
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 41 8e-04
SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06) 38 0.010
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4) 37 0.018
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13) 36 0.031
SB_8927| Best HMM Match : UCH (HMM E-Value=0) 35 0.055
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 32 0.51
SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25) 30 1.6
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 30 1.6
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.8
SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 28 8.3
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHE 476
+LQD L F + + L+GDN Y C +C K R VK I LP VL + LKRF ++
Sbjct: 151 NLQDSLEQFVNGEILEGDNAYFCEKCNKRRTTVKRMCIKTLPPVLVIQLKRFGYD 205
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRH 473
+ LQDCL F +EL ++++ CS C R K + P L VHLKR+RH
Sbjct: 1000 LQLQDCLRTFVDREEL--EDLWPCSMCNAQRTATKSLSVCRFPDTLIVHLKRYRH 1052
>SB_52467| Best HMM Match : UCH (HMM E-Value=2.6e-23)
Length = 422
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +3
Query: 306 VVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRH 473
VV L DC+ F + ++L ++ + C +CKK + K + LP VL +HLKRF +
Sbjct: 245 VVQLNDCIQLFLTREKLGANDPWYCPQCKKHQQASKKFDLWCLPEVLVIHLKRFSY 300
>SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20)
Length = 379
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHE-LLFS 488
+L++C+ F + L D+ + C +CKK R K + LP L +HLKRF + +LF
Sbjct: 255 TLRECVELFTEPETLGEDDAWHCPKCKKHREATKQMSLWRLPDTLIIHLKRFSFKNILFR 314
Query: 489 AKV 497
K+
Sbjct: 315 DKI 317
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHL 195
SII D+F G+L S + C +C +S + + F +LS+P+P L
Sbjct: 69 SIIVDMFQGQLKSKLTCPVCKTISIKYDPFMNLSVPLPKENKL 111
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +3
Query: 303 PVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHEL 479
P +SL++ L FF + L+G N Y C RC+ L++ + I P L + LKRF + +
Sbjct: 712 PSISLEEMLGYFFEPEMLEGSNQYHCERCQGLQDAERSVVIANAPMFLVLTLKRFSYNV 770
Score = 37.1 bits (82), Expect = 0.014
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +1
Query: 19 RAKSGSSGDGSNVKYRSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLA 198
R+ SG+ G G ++ +II D F G+L+ C C VS R E F DL L P + A
Sbjct: 581 RSMSGA-GLGQDM-ISNIIEDTFSGRLIVCHSCRRCRHVSCREEAFTDLPLAFPHQRDAA 638
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHE 476
SL D + F D L+G N Y C +C K + VK I LP V+ + LKRF ++
Sbjct: 1452 SLHDSMEQFVKGDLLEGANAYHCEKCDKKVDTVKRMCISKLPRVMAIQLKRFDYD 1506
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +1
Query: 64 RSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIP 180
+SII D+F G+L S V+C+ C VS R + F LSLP+P
Sbjct: 496 QSIIVDLFQGQLKSQVRCVECGYVSARFDPFTFLSLPLP 534
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 348 DELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFSAK 494
D L GDNMY+CS+C K K + VLP +LC + R+ ++ K
Sbjct: 1288 DTLDGDNMYTCSQCGKKVRAEKRACFTVLPRILCFNTMRYTFNMVTMMK 1336
>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
Length = 711
Score = 41.1 bits (92), Expect = 8e-04
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
+I+ ++F G+L+ +CL C+ R E FQD+S+P+
Sbjct: 118 NIVEEMFQGRLVHETKCLTCENAKQRFEDFQDVSVPV 154
Score = 34.7 bits (76), Expect = 0.072
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
+L+ ++ F + + LK +N Y C C + +LP VL +HLKRF
Sbjct: 183 TLEWAISQFATVEVLKDNNKYFCENCCTYTEARLSTFFDLLPQVLTLHLKRF 234
>SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06)
Length = 757
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
SL C+ F ++L DN Y C++C+ ++ + + LP VL + L RF
Sbjct: 136 SLNQCIKEFLKEEKLDCDNQYFCTQCQSKQDARRYIELKHLPPVLNLQLLRF 187
>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
Length = 382
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +1
Query: 76 SDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIP 180
SD+F G L S + CL C S + F DLSLPIP
Sbjct: 347 SDLFVGVLKSTLICLECGFKSVTFDPFWDLSLPIP 381
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSR 186
S + D+F + SA+ C C + ST + F LSLPIP R
Sbjct: 2096 SFVLDLFQAQYRSALSCPKCKQKSTTFDPFLCLSLPIPQR 2135
>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
Length = 969
Score = 35.9 bits (79), Expect = 0.031
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNG 407
S+ CL+ F + + L G N ++C C K RNG
Sbjct: 701 SVMSCLSVFCAKETLTGKNKFACEECTKARNG 732
>SB_8927| Best HMM Match : UCH (HMM E-Value=0)
Length = 316
Score = 35.1 bits (77), Expect = 0.055
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +1
Query: 73 ISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLAVLRC 210
+ ++F G L + +CL C+ VS++ E+F DLS+ + ++ ++ C
Sbjct: 205 VHEMFEGTLTNETRCLCCESVSSKDESFLDLSVDV--EQNTSITHC 248
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKK 395
+LQD L F + + L+GDN Y C +C K
Sbjct: 159 NLQDSLEQFVNGEILEGDNAYFCEKCNK 186
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 32.3 bits (70), Expect = 0.39
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +3
Query: 57 EVPKHHIRRVRXEVTISRSVPNM*QGINENRNIPRLVAADPVPGTLGRAALPAAHAEP 230
EVPK H RR T+SRS P +GI+E + ++A +PV G A A P
Sbjct: 22 EVPKSHRRRP----TVSRSRPKPDEGISEAVEVDIVIAGEPVTVDGGVAKTREAKPSP 75
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 162 LVAADPVPGTLGRAALPAAHAEPPRGPQRTG 254
+V DP+P T AA PA +A PP GP + G
Sbjct: 709 MVHYDPMPQTSNPAARPAFYAVPPGGPVQFG 739
>SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)
Length = 383
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 49 SNVKYRSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLAVLRCQQ--PM 222
S +K+R++ + G +L+ + CL + VSTRI+ + + L P R RC Q +
Sbjct: 6 STLKHRNLPDENAVGLVLNKLLCL--NTVSTRIKRYHNFPLIGPIRLRQGCQRCSQMSSI 63
Query: 223 LNHHAA 240
++H A+
Sbjct: 64 VSHDAS 69
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 629 CPAAYRAHVADHRXQRVPRXGTRCTLC 549
CP AY H A +RVPR C +C
Sbjct: 1745 CPLAYHVHCAYPPLRRVPRGNWACQVC 1771
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 306 VVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
V ++D L +EL+G ++CS+ + + VLP VL +HLKRF
Sbjct: 524 VSCIEDALNHLTVKEELQG---FTCSKTNAQIDVSRRVSFEVLPKVLILHLKRF 574
>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 100 LSAVQCLICDRVSTRIETFQDLSLPIPSREHL 195
+S ++C D VSTR+E F D+ L + ++++
Sbjct: 355 VSYIKCTKVDYVSTRLEPFYDIQLNVKGKKNI 386
>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 757
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Frame = +3
Query: 321 DCLAAFFSADELK-------GDNMYSCSRCKK 395
DC AAFF+A ELK G+ Y+C C K
Sbjct: 614 DCDAAFFAAHELKKHSRRHTGEKPYACVNCNK 645
>SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +1
Query: 316 CKTVWPP-SSAPTNSKAT 366
C TVWPP +S+PTN AT
Sbjct: 2 CATVWPPTTSSPTNYTAT 19
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = +3
Query: 9 EFGTSKKRFIRRRQQREVPKHHIRRVRXEVTISRSVPNM*QGINENRNIPRLVAADPVPG 188
E S+KR R KH + V + V Q EN N V A P
Sbjct: 999 EHSPSRKR--RNSDNHGHKKHSLTGVSLPSVVEVKVKPASQSAEENENDVTEVRASPSKC 1056
Query: 189 TLGRAALPAAHA 224
T+GR + AHA
Sbjct: 1057 TMGRQSKLVAHA 1068
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,667,580
Number of Sequences: 59808
Number of extensions: 344967
Number of successful extensions: 1068
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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