Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30137.Seq
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 33 0.30
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 33 0.40
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 32 0.52
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 31 0.92
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 31 1.2
12_01_0193 + 1436165-1437247 31 1.6
10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028 31 1.6
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 31 1.6
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 29 3.7
04_03_0284 + 13896307-13896765 29 4.9
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 29 4.9
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 29 6.5
02_01_0507 - 3682383-3682703,3682830-3682970,3683071-3683147,368... 28 8.5
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 33.1 bits (72), Expect = 0.30
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 263 DDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSL 442
D K+ +++L+++++ RE A++K K EEE K+ +E + L + SL
Sbjct: 406 DQEKELKALQEAELRRLEETAARE--AALEKQKQEEEERRKKQLEEEELESSLASKQASL 463
Query: 443 P 445
P
Sbjct: 464 P 464
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 32.7 bits (71), Expect = 0.40
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 511 WVHRLRRQGK-SLAFLTLRDGT--GYLQCVLHGLLCQTYNALVLSTESSVVLYGKLEAVP 681
WV R QGK + AFL L DG+ LQ ++ + A + +T +SV++ G+L+ P
Sbjct: 48 WVKTGREQGKGTFAFLELNDGSCASNLQVLVDAAVHPL--APLTATGTSVLVEGELKKPP 105
Query: 682 EGKK 693
EG K
Sbjct: 106 EGAK 109
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 32.3 bits (70), Expect = 0.52
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 517 HRLRRQGKSLAFLTLRDGTGYLQCVLHG 600
H +R G+ +AFL LR G+ +QCV+ G
Sbjct: 64 HAVRAVGRRVAFLVLRQGSSTVQCVVGG 91
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 31.5 bits (68), Expect = 0.92
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -1
Query: 236 WLFASMMHCFQYCLEWFLFRTITCIVIAILIRGIYLGQAKVSNVRHVERLLTNY 75
W F + CF L++FL ++A ++ G + + NV +E ++ Y
Sbjct: 344 WSFGKLALCFALLLQFFLLDLAAADIVAFVVAGFHQCRYGYKNVADLEGVVAGY 397
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 573 WVPTVRSTWFTMSDLQCSSPIYGVIC-GLVWKIRGCARGKEGSGWS 707
W + + T + S+P+ C L W++ GC GK G+ S
Sbjct: 366 WYIAIETVNITQMNSTASTPLLDTTCFSLEWQVTGCLNGKAGTNCS 411
>12_01_0193 + 1436165-1437247
Length = 360
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 329 RENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHR 487
+E KA KA E ++ N D A+ IL + S+P +TV K C T+ R
Sbjct: 43 QEKEKARQKAIRAE--IKRFRANQDAAEAILRKRKASMPPSTVTKFCTDTDLR 93
>10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028
Length = 341
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 467 IFSQQWPLVNLDPLAEESSLPHLSF 393
IF+QQW L+NLD A E + L F
Sbjct: 151 IFNQQWKLINLDLSANEKEVAMLDF 175
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = +2
Query: 179 ERETIQDNIESNASCWQRAISHNLCYSKDDTKDYDVAAKSQLKKIQK--IWVRENYKAM- 349
ERE IQ + ++ ++ + ++D ++ + K Q K+ ++ + RE+ K +
Sbjct: 350 EREKIQHSSQTLKE--MESVYNKHAKRQEDLENNMKSCKDQFKEFERKDVKYREDLKHLK 407
Query: 350 DKAKAEEENTEKRSQNLDEAKKILLQEDPSLPK 448
K K E+ TEK + +DE+ K + + +P+
Sbjct: 408 QKIKKLEDKTEKDTSKIDESTKEVEESSSLIPQ 440
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 305 KKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEH 484
K+ +K W N +A+ +A + EK+ D+AK+ + +ED + K E +
Sbjct: 178 KERKKKWDEHNQEAISEALKQLNEFEKKHSKSDDAKQKMAREDLQSRLEYLRKQAEGYDD 237
Query: 485 RGQRICI 505
RG I I
Sbjct: 238 RGPVIDI 244
>04_03_0284 + 13896307-13896765
Length = 152
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 697 PGGHELTADYWGIDWTR 747
PGG L+A +W I WTR
Sbjct: 135 PGGTSLSASFWRIGWTR 151
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/76 (25%), Positives = 30/76 (39%)
Frame = +2
Query: 263 DDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSL 442
DD + D +AK KK K +DK + E ++ + KK L+E+P
Sbjct: 440 DDGEKVDASAKKSKKKKSKAEADGEAMDLDKPSNVADEAEPGTEKKKKKKKHKLEEEPQE 499
Query: 443 PKATVVKICETTEHRG 490
+ +V E G
Sbjct: 500 QEKSVAHANGDAEENG 515
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 263 DDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSL 442
D K+ +++L++++ RE A+ K K EEE ++ +E + L + SL
Sbjct: 435 DREKELKAEQEAELRRLEAAAERE--AAIAKQKQEEEEKRRKQLEEEELESKLAAKQASL 492
Query: 443 PK 448
PK
Sbjct: 493 PK 494
>02_01_0507 -
3682383-3682703,3682830-3682970,3683071-3683147,
3683835-3683901
Length = 201
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 487 WSEDMHQRWVHRLRRQG 537
W E++H+R+VH +RR G
Sbjct: 3 WPEELHRRFVHAVRRLG 19
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,166,781
Number of Sequences: 37544
Number of extensions: 537420
Number of successful extensions: 1422
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -