Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30137.Seq
(875 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11) 97 2e-20
SB_11248| Best HMM Match : LMP (HMM E-Value=0.18) 37 0.019
SB_24178| Best HMM Match : FARP (HMM E-Value=6.1e-31) 35 0.075
SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 31 1.6
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43) 30 2.1
SB_43914| Best HMM Match : IRK (HMM E-Value=5.3) 30 2.8
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 29 4.9
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_17142| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
>SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)
Length = 305
Score = 97.1 bits (231), Expect = 2e-20
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 511 WVHRLRRQGKSLAFLTLRDGTGYLQCVLHGLLCQTYNALVLSTESSVVLYGKLEAVPEGK 690
WVHRLRRQGK+L F+ LRDGTG+LQCVL +LC TY ALVL TE++V LYG ++AVPEGK
Sbjct: 191 WVHRLRRQGKNLMFVVLRDGTGFLQCVLTDVLCHTYEALVLCTEATVCLYGVVKAVPEGK 250
Score = 66.9 bits (156), Expect = 2e-11
Identities = 32/83 (38%), Positives = 55/83 (66%)
Frame = +2
Query: 257 SKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDP 436
SK + + ++ AK+QLKK K++ +E K+ ++ K E E ++R +NL++A+ I ++ D
Sbjct: 106 SKAEGERFEKIAKAQLKKATKLYQQEKRKSEEREKKEAEKAQQREKNLEDARNITIKPDE 165
Query: 437 SLPKATVVKICETTEHRGQRICI 505
SLP A +KI +TT+ R QR+ I
Sbjct: 166 SLPVAKQIKIRDTTDCREQRVKI 188
>SB_11248| Best HMM Match : LMP (HMM E-Value=0.18)
Length = 442
Score = 37.1 bits (82), Expect = 0.019
Identities = 26/109 (23%), Positives = 46/109 (42%)
Frame = +2
Query: 185 ETIQDNIESNASCWQRAISHNLCYSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKA 364
+TI++N+E+ + +S C +D V+ S +Q I R+ + + +
Sbjct: 41 KTIKENVETELQKVKEQLSDQACQLEDPVSS--VSRVSYFVTVQAIQTRDAERIAEITRL 98
Query: 365 EEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRD 511
EEE EK + LDE K + L E +H+G + + D
Sbjct: 99 EEE-LEKSQKGLDELNKQITDMTRELQDTQTRLEAEKQDHQGDKTQLED 146
>SB_24178| Best HMM Match : FARP (HMM E-Value=6.1e-31)
Length = 721
Score = 35.1 bits (77), Expect = 0.075
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 308 KIQKIWVRENYKAMDKAKAEEENTEKRSQNLD-EAKKILLQEDPSLPKATVVKICETTEH 484
KI+KI V ++K + K D + +KI + D + K + KIC T+ H
Sbjct: 113 KIRKICVTSDHKIRKICVTSDHKIRKICVTSDHKIRKICVTSDHKIRKICIWKICVTSNH 172
Query: 485 RGQRICI 505
+ ++IC+
Sbjct: 173 KIRKICV 179
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Frame = +2
Query: 308 KIQKIWVRENYKAMDKAKAEEENTEKRSQNLD-EAKKILLQEDPSLPKATVV------KI 466
K +KI V ++K + K D + +KI + D + K V KI
Sbjct: 91 KFRKICVTSDHKIRKICVTSDNKIRKICVTSDHKIRKICVTSDHKIRKICVTSDHKIRKI 150
Query: 467 CETTEHRGQRICIRDGYIVSGAKV 538
C T++H+ ++ICI + S K+
Sbjct: 151 CVTSDHKIRKICIWKICVTSNHKI 174
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 308 KIQKIWVRENYKAMDKAKAEEENTEKRSQNLD-EAKKILLQEDPSLPKATVVKICETTEH 484
KI+KI V ++K + K D + +KI + + + KIC T++H
Sbjct: 124 KIRKICVTSDHKIRKICVTSDHKIRKICVTSDHKIRKICIWKICVTSNHKIRKICVTSDH 183
Query: 485 RGQRICI 505
+ ++ICI
Sbjct: 184 KIRKICI 190
>SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 33.9 bits (74), Expect = 0.17
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Frame = +2
Query: 266 DTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLP 445
DT Y + QLK +++ V+E +E+E EK + DE K+ Q + S P
Sbjct: 300 DTPHYLKDKRIQLKGDEEVKVKELLAKAGTKGSEDEEDEKEQEKDDEGPKLQKQVETSKP 359
Query: 446 -----KATVVKICETTEHRGQRICIRDGYIVSGAK 535
TV K+ E E+ R G ++G K
Sbjct: 360 GEEQEMVTVTKVVEEIEYTIHRDTKGLGINIAGGK 394
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +2
Query: 278 YDVAAKSQLKKIQKIWVRENYK----AMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLP 445
Y AK Q+ K K+ R + +MD+ EE +T + ++ + K+ + LP
Sbjct: 1682 YGFTAKGQVAKDLKLGKRRRERRGEESMDEDSCEETDTNETRESTKKMKESMTASPDGLP 1741
Query: 446 KATVVKICETTEHRGQRICIRD 511
+ K+C+ +R ++ +++
Sbjct: 1742 DSPKEKMCDGRNNRKKKESLKE 1763
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 269 TKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKK 415
++ Y QL+K+++ E+ + D+A+ T KR +NL+E KK
Sbjct: 195 SEKYKSIQSEQLEKLKEQTRPESEELRDRARQLSRETNKRRKNLEEKKK 243
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 335 NYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDP 436
NY +D++K +EN ++ AKKI ++E+P
Sbjct: 282 NYTEVDESKPADENKNDKTDGAKTAKKINIKENP 315
>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
Length = 443
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 293 KSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPK 448
+SQ +++QKIW +A AE + +++Q+L E KKI ++ S P+
Sbjct: 368 RSQKRRVQKIW---RLRAGVLQAAEMKKKRQKAQSLAERKKIKKEKKKSNPR 416
>SB_43914| Best HMM Match : IRK (HMM E-Value=5.3)
Length = 141
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 239 KWLFASMMHCFQYCLEWFLFRTITCIVI 156
KW + ++ C Y L W LF TI +++
Sbjct: 103 KWHWVILLFCVSYILSWVLFGTIWWLIV 130
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +2
Query: 257 SKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDP 436
S+D K+ ++A K K +K+ K ++K AEEE +K ++ D K ++
Sbjct: 85 SQDTKKEGEMAEKKAKAKERKL-----QKQLEKEAAEEEKVKKPKKSRDGEKTKKSKKVT 139
Query: 437 SLPKATVVK 463
S PK+ VK
Sbjct: 140 SEPKSPKVK 148
>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Frame = +2
Query: 260 KDDTKDYDVAA---KSQLKKIQKIWVRENYKAMDKAKAEEENTEK 385
+DDTK+ D AA K++L++ + + VRE + + +A +E+ E+
Sbjct: 271 EDDTKEVDAAAAADKARLQRSKSLKVREGFSSAWEAIRVKESVER 315
>SB_17142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 832 HXGSLXAYGLIARQARLPH*GWR-RTTWWCESNQFPSNQLSAHDHPEPSFPR 680
H G L A L+ + + GW R+ W C+ +P N + + FPR
Sbjct: 49 HQGFLAAVKLVHKSGYVSCAGWSYRSHWGCKGLAYPLNMFVTNAKNQVIFPR 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,233,163
Number of Sequences: 59808
Number of extensions: 575013
Number of successful extensions: 1562
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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