Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30136.Seq
         (884 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.                  31   7.3  
M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.                  31   7.3  
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.                  31   7.3  

>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
          Length = 1270

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5    PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 112
            P T    P T    PP TT    P TTPI P  ST T
Sbjct: 894  PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 930



 Score = 30.7 bits (66), Expect = 7.3
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5    PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 112
            P T    P T    PP TT    P TTPI P  ST T
Sbjct: 973  PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 1009


>M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.
          Length = 573

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5   PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 112
           P T    P T    PP TT    P TTPI P  ST T
Sbjct: 177 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 213



 Score = 30.7 bits (66), Expect = 7.3
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5   PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 112
           P T    P T    PP TT    P TTPI P  ST T
Sbjct: 256 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 292



 Score = 30.3 bits (65), Expect = 9.7
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 2   TPVTEQQSPHTAAL--PPRTTRIHNPPTTPIRPNNSTLT 112
           +P T   SP T     PP TT    P TTPI P  ST T
Sbjct: 136 SPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTT 174


>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
          Length = 5179

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5    PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 112
            P T    P T    PP TT    P TTPI P  ST T
Sbjct: 1519 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 1555



 Score = 30.7 bits (66), Expect = 7.3
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5    PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 112
            P T    P T    PP TT    P TTPI P  ST T
Sbjct: 1598 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 1634


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,683,616
Number of Sequences: 237096
Number of extensions: 2119825
Number of successful extensions: 3911
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3880
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)