Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30136.Seq
(884 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53153-2|AAQ91899.1| 422|Caenorhabditis elegans Hypothetical pr... 32 0.63
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 32 0.63
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 31 0.83
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 7.7
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 7.7
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 7.7
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 28 7.7
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 28 7.7
>U53153-2|AAQ91899.1| 422|Caenorhabditis elegans Hypothetical
protein T19A5.3b protein.
Length = 422
Score = 31.9 bits (69), Expect = 0.63
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 32 TAALPPRTTRIHNPPTTPI-RPNNSTLTAMA 121
T LPP TT I+ PPTT RP +T T A
Sbjct: 216 TTTLPPETTTIYVPPTTASRRPTTTTTTTEA 246
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 31.9 bits (69), Expect = 0.63
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 32 TAALPPRTTRIHNPPTTPI-RPNNSTLTAMA 121
T LPP TT I+ PPTT RP +T T A
Sbjct: 284 TTTLPPETTTIYVPPTTASRRPTTTTTTTEA 314
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 664 FPGPSXYNVVTGKTPGVTPL*SPCRHXPLSASWVISXXGPHRLALXQQLRXPG 822
FP P+ Y + G TPG P+ +P + S S+ S P +A QQ R PG
Sbjct: 434 FP-PNPYGMHPGMTPGGYPMSAPGKMPFGSPSFPQSAPSPAAMAAMQQGRMPG 485
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 5 PVTEQQSPHTA-ALPPRTTRIHNPPTTPIRPNNST 106
P TE P T A PP TT+ PPTT P +T
Sbjct: 170 PTTEAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTT 204
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 11 TEQQSPHTAALPPRTTRIHNPPTTPIRPNNST 106
T P T A PP TT+ PPTT P +T
Sbjct: 165 TTAAEPTTEAPPPPTTKAPPPPTTKAPPPPTT 196
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 628 PVPNSPLVSRITFPGPSXYNVVTGKTPG 711
P+P+ P + +T P P+ + VT K PG
Sbjct: 990 PIPSGPKKTSLTAPNPADTSDVTTKQPG 1017
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 628 PVPNSPLVSRITFPGPSXYNVVTGKTPG 711
P+P+ P + +T P P+ + VT K PG
Sbjct: 990 PIPSGPKKTSLTAPNPADTSDVTTKQPG 1017
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 628 PVPNSPLVSRITFPGPSXYNVVTGKTPG 711
P+P+ P + +T P P+ + VT K PG
Sbjct: 990 PIPSGPKKTSLTAPNPADTSDVTTKQPG 1017
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 628 PVPNSPLVSRITFPGPSXYNVVTGKTPG 711
P+P+ P + +T P P+ + VT K PG
Sbjct: 990 PIPSGPKKTSLTAPNPADTSDVTTKQPG 1017
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 61 YSQPAYNSYPPQQQYSNSYG 120
Y Q Y PPQ QY+ YG
Sbjct: 2034 YQQQMYQQQPPQPQYAQQYG 2053
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 61 YSQPAYNSYPPQQQYSNSYG 120
Y Q Y PPQ QY+ YG
Sbjct: 659 YQQQMYQQQPPQPQYAQQYG 678
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,930,236
Number of Sequences: 27780
Number of extensions: 312700
Number of successful extensions: 803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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