Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30134.Seq
(882 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 31 1.1
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 31 1.1
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 31 1.1
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 31 1.1
AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical... 31 1.4
U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical pr... 29 5.8
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 424 RNTLLSRHETASSSHRVANVXPVPAASKAHTGPAGGATHRPAHSGGGTPSRTLART 257
RN+ + S + ++ + ++HT +GGAT S G+P+ +LART
Sbjct: 371 RNSSVGSSGYGSGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLART 426
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 424 RNTLLSRHETASSSHRVANVXPVPAASKAHTGPAGGATHRPAHSGGGTPSRTLART 257
RN+ + S + ++ + ++HT +GGAT S G+P+ +LART
Sbjct: 384 RNSSVGSSGYGSGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLART 439
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 424 RNTLLSRHETASSSHRVANVXPVPAASKAHTGPAGGATHRPAHSGGGTPSRTLART 257
RN+ + S + ++ + ++HT +GGAT S G+P+ +LART
Sbjct: 383 RNSSVGSSGYGSGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLART 438
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 424 RNTLLSRHETASSSHRVANVXPVPAASKAHTGPAGGATHRPAHSGGGTPSRTLART 257
RN+ + S + ++ + ++HT +GGAT S G+P+ +LART
Sbjct: 386 RNSSVGSSGYGSGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLART 441
>AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical
protein C18G1.1 protein.
Length = 136
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 166 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 62
+S+ LK Y +KP R TE++ +H+RT + I+L
Sbjct: 45 ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79
>U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical
protein C50F2.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 103 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 2
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
>U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical
protein C43E11.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 103 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 2
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/72 (26%), Positives = 28/72 (38%)
Frame = -3
Query: 448 SKLPNL*RRNTLLSRHETASSSHRVANVXPVPAASKAHTGPAGGATHRPAHSGGGTPSRT 269
++ P R +R A++ A+ PV +G A PAH PS +
Sbjct: 312 TRAPPATRAPPATTRAPPATTRPAPASQPPVREPETPDSGYPSPAPQEPAHPSPSYPSPS 371
Query: 268 LARTSHPGLSYP 233
S+P SYP
Sbjct: 372 YPSPSYPSPSYP 383
>Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical
protein C14A4.3 protein.
Length = 603
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = +2
Query: 491 HFYGTYFVSPSNITIDHLH*LIGNVLNGKNLFVFYVILGINNFNQYIFA-------HVAS 649
H++G ++P NI + ++ G L G+ FY+ NN+N IFA +A
Sbjct: 267 HYFGKTVLAPLNIFLYNVVSGPGPSLYGEEPLSFYIKNLFNNWNIVIFAAPFGFPLSLAY 326
Query: 650 FVIIWMT 670
F +WM+
Sbjct: 327 FTKVWMS 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,192,166
Number of Sequences: 27780
Number of extensions: 429935
Number of successful extensions: 1184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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