Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30132.Seq
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   3.1  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   4.1  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 361 LQDYPPPDHFQTFHKSTGPSL 299
           ++D+P P  F + H S  P L
Sbjct: 234 VKDFPSPGGFPSIHNSINPFL 254


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 337 GQEGDNPGASSKSEASEGNTKRS 405
           GQ+  N  ++SK + S+GN  ++
Sbjct: 83  GQQNSNYSSNSKPDCSKGNADQN 105


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 355 DYPPPDHFQTFHKSTGPSLCGQM 287
           +YP PDH  T + +   SL   M
Sbjct: 305 EYPIPDHMNTTNHAIVQSLVNSM 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,124
Number of Sequences: 336
Number of extensions: 3792
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)