Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30131.Seq
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 114 4e-26
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 114 4e-26
05_07_0129 - 27886738-27886767,27887043-27887312,27888407-278884... 28 3.4
05_01_0127 - 863755-865182 27 6.0
10_08_0492 + 18292208-18292248,18292874-18293365,18294139-182943... 27 7.9
06_03_0424 - 20648938-20649564,20650588-20650902 27 7.9
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 27 7.9
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 27 7.9
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 114 bits (274), Expect = 4e-26
Identities = 54/82 (65%), Positives = 64/82 (78%)
Frame = +3
Query: 3 KLVLAARAVVAIENPADVFVISSRXFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 182
KL LAAR +VAIENP D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 183 REPRLLIVLDPAQXHQPITEAS 248
EPRLLI+ DP HQPI E++
Sbjct: 121 SEPRLLILTDPRTDHQPIKESA 142
Score = 81.4 bits (192), Expect = 3e-16
Identities = 35/75 (46%), Positives = 46/75 (61%)
Frame = +2
Query: 257 IPVIAXCNTDSPLXFVDIAIPCNTKSSHSIGLMWWXXXXXXXXXXXXXPRDQXWDVVVDL 436
IP IA C+TDSP+ +VDI IP N K SIG ++W WDV+VDL
Sbjct: 146 IPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDL 205
Query: 437 FFYRDPEESEKDEQQ 481
FFYRDPEE+++ E++
Sbjct: 206 FFYRDPEEAKEQEEE 220
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 114 bits (274), Expect = 4e-26
Identities = 54/82 (65%), Positives = 64/82 (78%)
Frame = +3
Query: 3 KLVLAARAVVAIENPADVFVISSRXFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 182
KL LAAR +VAIENP D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 183 REPRLLIVLDPAQXHQPITEAS 248
EPRLLI+ DP HQPI E++
Sbjct: 121 SEPRLLILTDPRTDHQPIKESA 142
Score = 81.4 bits (192), Expect = 3e-16
Identities = 35/75 (46%), Positives = 47/75 (62%)
Frame = +2
Query: 257 IPVIAXCNTDSPLXFVDIAIPCNTKSSHSIGLMWWXXXXXXXXXXXXXPRDQXWDVVVDL 436
IP IA C+TDSP+ +VDI IP N K +SIG ++W WDV+VDL
Sbjct: 146 IPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDL 205
Query: 437 FFYRDPEESEKDEQQ 481
FFYRDPEE+++ E++
Sbjct: 206 FFYRDPEEAKEQEEE 220
>05_07_0129 -
27886738-27886767,27887043-27887312,27888407-27888482,
27889148-27889962
Length = 396
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 342 EWEDLVLHGIAMSTNXSGESVLXKAITG 259
EW++L+L G A+++ SGE L A G
Sbjct: 72 EWDELLLSGAALASESSGELQLVAASPG 99
>05_01_0127 - 863755-865182
Length = 475
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 199 KRRGSRNAAWIWLVKAPGVKRPAIGVAPVXAANFSTAR*P 80
KRR +A ++ + PG RP G P AA+ A P
Sbjct: 209 KRRNGEHACEVYTLGKPGGWRPCAGRVPASAASILPAMPP 248
>10_08_0492 +
18292208-18292248,18292874-18293365,18294139-18294319,
18294388-18294442,18294473-18294592,18295335-18295465,
18295691-18295891
Length = 406
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 170 DLVSKSTWCETSRNRRSTGVXGKLQYSTLT 81
DLVS+ +CE S+ + + GKL ++ +T
Sbjct: 246 DLVSRQLFCENSKQKGADDSSGKLFFAEVT 275
>06_03_0424 - 20648938-20649564,20650588-20650902
Length = 313
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 43 TPLMCSSSHHGPSVSVLY*SLP 108
TP SSSHH P +S L+ LP
Sbjct: 75 TPSSISSSHHTPPLSALHIMLP 96
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -2
Query: 409 VTGKHTTKPXXFTCQQPPHQTNRVGRLGVAWDSNVHKX*WGVC 281
V + T K + PP Q RVG GV H WG C
Sbjct: 3 VDQRTTAKAIMPPVEMPPVQPGRVGLWGVTVRCRDHGRCWGFC 45
>04_04_1331 -
32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 425 VVDLFFYRDPEESEK 469
++D+F+YRDP E EK
Sbjct: 721 MLDVFYYRDPNEMEK 735
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,900,961
Number of Sequences: 37544
Number of extensions: 248400
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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