Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30131.Seq
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   0.74 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   0.74 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   5.2  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 426 TTSQXWSRGSTPRSLSXSRANNHHIKP 346
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 426 TTSQXWSRGSTPRSLSXSRANNHHIKP 346
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 313 YPMQHQVFPLYWFDVVVV 366
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 313 YPMQHQVFPLYWFDVVVV 366
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 182 ECSLDLVSKSTWCE 141
           E S+DLV  ST+CE
Sbjct: 260 ERSVDLVVTSTYCE 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,799
Number of Sequences: 438
Number of extensions: 2530
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)