Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30124.Seq
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 89 4e-19
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 85 1e-17
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 81 2e-16
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 4.3
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 25 7.5
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 7.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.9
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 89.4 bits (212), Expect = 4e-19
Identities = 45/104 (43%), Positives = 62/104 (59%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G PNLK+VREL+
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVN 165
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
A++ ++ + IHEI+TVG FK A+NF
Sbjct: 166 KQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANF 209
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
GNYYVP E KL FVIRIRGIN + PK+ K L
Sbjct: 81 GNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 69 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 248
SK+ PES+LK + +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 249 EID 257
+I+
Sbjct: 70 QIE 72
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 84.6 bits (200), Expect = 1e-17
Identities = 42/104 (40%), Positives = 60/104 (57%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ RK++QL RL QINNG+FV+ NKA ML++ EPY+ +G PN K+VREL+
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
A++ ++ + IHEI+TVG FK A+NF
Sbjct: 165 KQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANF 208
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
GNY+VP E KL FV+RIRGIN + PK+ K L
Sbjct: 80 GNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +3
Query: 90 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEID 257
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIE 71
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 80.6 bits (190), Expect = 2e-16
Identities = 44/104 (42%), Positives = 56/104 (53%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
++RKVL+L RL +INN VFVR NKA MLRI EPY+ +G PNL SVREL+
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKIN 163
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
AL+ + + IHEI+ VG FK + F
Sbjct: 164 GQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKF 207
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 90 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 254
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ I
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERI 69
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G+ +VP E KL FVIRI G+ + PK K L
Sbjct: 79 GDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 559 TALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNFP 669
T L R + +T +SVL +F+H+ + K +S +P
Sbjct: 2294 TMRLLRSNQDTLMSVLESFLHDPLVEWNRKKSSSKYP 2330
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 260 LVDFITFLDAVFLDVLFSPLEDFPLLL 180
LVDFI L +V++D F+ LE PL++
Sbjct: 211 LVDFIIRLYSVYVDCQFTYLEINPLVV 237
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 278 DCVLVWLVDFITFLDAVFLDVLFS 207
+C++ L+ F+TF V LD +FS
Sbjct: 410 NCIISILILFLTFAGTVTLDAVFS 433
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 668 GKLLAYLNFSPTVKISWMKVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFDT 504
G LL FS + I + KVL + ++EP + A+ SD +GE F+T
Sbjct: 1280 GDLLELACFS--MMIDFFKVLPEFSSSYVEPTIKCALASDRAFEHDAIGELLFET 1332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,864
Number of Sequences: 5004
Number of extensions: 52859
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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