Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30124.Seq
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 97 1e-20
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 92 4e-19
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 66 2e-11
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 31 0.63
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 5.9
09_02_0575 + 10845261-10847057 28 7.7
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 96.7 bits (230), Expect = 1e-20
Identities = 49/104 (47%), Positives = 64/104 (61%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 160
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
++ G + + +HEI TVG FK A+NF
Sbjct: 161 KQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNF 204
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL FV+RIRGIN + PK+ K L
Sbjct: 76 GGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 75 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 248
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKE 64
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 91.9 bits (218), Expect = 4e-19
Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 8/112 (7%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELV--------S 510
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+ +
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 159
Query: 511 NVDSPS*VDNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
P + V + + L +G + + +HEI TVG FK A+NF
Sbjct: 160 KQRIPLTNNKVIEE--SWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEANNF 209
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Frame = +3
Query: 471 GIPQLKECP*VSIKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDL 614
G P LK + KRG+ KL+ QRIP+T+N ++E+ L KH+IIC+EDL
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDL 192
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV E KL FV+RIRGIN + PK+ K L
Sbjct: 75 GGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 87 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 248
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKE 63
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/103 (32%), Positives = 56/103 (54%)
Frame = +1
Query: 358 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*VD 537
+R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V++L+
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDK 163
Query: 538 NVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
+ L+ + + L +HEI +VG F+ ASNF
Sbjct: 164 EPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNF 206
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 153 TLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEID 257
TL+ R+ IK KRE+F+R KE+RI+E ++D
Sbjct: 149 TLETRTDPIKLKREVFRRKR---KEHRIQELLQVD 180
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/80 (25%), Positives = 32/80 (40%)
Frame = -2
Query: 620 WMKVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFDTNSRTLFKLGYPQAM*GSAIRS 441
W + D M L+NN G+D + + T + +F+L + RS
Sbjct: 3489 WSTPFSIDANGVMCVLMNNTTGNDQALVRVNVRSGTKCSRYEVVFQLACWSSPYRVENRS 3548
Query: 440 IFTVALFRRTNTPLFIWRSL 381
+F FR+ + WRSL
Sbjct: 3549 MFLPVRFRQVGGDDYSWRSL 3568
>09_02_0575 + 10845261-10847057
Length = 598
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 544 IRCPLSLANPRLILTHGHSL---SWGIPKQCKARRYV 443
+RC L N +L+L SL SW + +C+ RRY+
Sbjct: 447 LRCIFLLNNWQLVLHRIESLDLPSWALIDRCRTRRYI 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,411,406
Number of Sequences: 37544
Number of extensions: 328868
Number of successful extensions: 754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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