Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30123.Seq
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 139 3e-34
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 86 5e-18
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 86 5e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 69 9e-13
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 1.9
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.4
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 5.9
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 7.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 139 bits (337), Expect = 3e-34
Identities = 71/145 (48%), Positives = 90/145 (62%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
Q ER+NVY+NEA+ GKYVPR VL+DL+P TMDAV+SG FG LFRPDN +YGQ+ A N WA
Sbjct: 43 QHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWA 102
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E+ ++ LDV+RREAE A + +T + + + P
Sbjct: 103 KGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDR 162
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F P+ VVEPYN TL
Sbjct: 163 MMATFSVAPAPKSSDTVVEPYNATL 187
Score = 66.9 bits (156), Expect = 3e-12
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSD 252
MREI+++Q G CGNQ+G FW I+DEHG+D +G YHG S+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSE 41
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 85.8 bits (203), Expect = 5e-18
Identities = 35/76 (46%), Positives = 56/76 (73%)
Frame = +3
Query: 276 YYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKGHYTEG 455
+++E GK+VPR++ +DL+P +D VR+GP+ LF P+ V G+ A+NN+A+GHYT G
Sbjct: 56 FFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVG 115
Query: 456 VEILESALDVIRREAE 503
E+++S L+ IRR A+
Sbjct: 116 KEMIDSVLERIRRMAD 131
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDLNSKGS 270
MRE+I++ VG G QIG WE+ EHGI P G +S+++ S
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNS 47
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 581 VNRIREEYPDRIILTFSVFPSPRVS 655
+ R+ EY + L FSV+P+P+VS
Sbjct: 158 LERLNMEYGKKSNLQFSVYPAPQVS 182
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 85.8 bits (203), Expect = 5e-18
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 7/147 (4%)
Frame = +3
Query: 270 NVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKGHYT 449
+ +++E GKYVPR++ +DL+P +D VR+GP+ LF P+ + G+ A+NN+A+GHYT
Sbjct: 50 STFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYT 109
Query: 450 EGVEILESALDVIRREA------EGWIAC-KFSDVTLARWRYRFRIRYATS*TGYAKSIP 608
G E+++ D IRR A +G++ F T + + R A Y K
Sbjct: 110 VGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAME---YTKKSK 166
Query: 609 TELY*PFQSFQVPECRICVVEPYNTTL 689
+ F + P+ VVEPYN+ L
Sbjct: 167 LQ----FSVYPAPQVSTSVVEPYNSVL 189
Score = 46.4 bits (105), Expect = 4e-06
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGD-SDLNSKGSTCT 279
MREII++ VG G QIG WE+ EHGI P+G + + + NS G T
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFST 51
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 581 VNRIREEYPDRIILTFSVFPSPRVS 655
+ R+ EY + L FSV+P+P+VS
Sbjct: 154 LERLAMEYTKKSKLQFSVYPAPQVS 178
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 68.5 bits (160), Expect = 9e-13
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +3
Query: 258 LERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQN--CAANNW 431
++R +V++ ++ +Y+PR +LIDL+P ++ + S +G L+ P+N + +N A NNW
Sbjct: 45 VDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNW 104
Query: 432 AKGHYTEGVEILESALDVIRREAEG 506
A G Y+ I E +D+I REA+G
Sbjct: 105 ANG-YSHAERIFEDIMDMIDREADG 128
Score = 52.0 bits (119), Expect = 8e-08
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +1
Query: 133 REIINLQVGSCGNQIGGKFWEVISDEHGIDPSG 231
REII LQ G CGNQIG +FW+ + EHGI P G
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDG 35
Score = 31.9 bits (69), Expect = 0.090
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 575 YFVNRIREEYPDRIILTFSVFP-SPRVSDL 661
+ + R+ + YP +II T+SVFP S VSD+
Sbjct: 152 FLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 224 QADATTATPTSTRKDQRVLQRGIGWEICSSHGSYRLEAGHDGRGEVGTLR 373
Q + T P KD + Q+GI S G+Y L G D V LR
Sbjct: 279 QKGSRTKRPVMKIKDAHLPQQGISCLSFSQDGNYLLSRGEDNALRVWDLR 328
>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 103
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 213 RHRSKRMLPRRLRPQLERINVYYNEASAGKYVPRTVLIDLKP 338
R R ++M P++ QL +N + KY+P+ V+ LKP
Sbjct: 34 RARLQKMPPQQANKQLNALNNLLDNVYWNKYIPKQVV--LKP 73
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 432 AKGHYTEGVEILESALDVIRREAEGWIA 515
A+GH GVE++ + D +R+++E A
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTA 210
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 361 RDPSDAYSDRTISSTDKTVRPTTGRRD 441
+ P + +SD+TI S T+ PT ++
Sbjct: 702 KTPMNLFSDQTIGSITNTIEPTAAAKN 728
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 181 GKFWEVISDEHGIDPSGCYHGDSDLNSKGSTCTTTRHRLGNMFL 312
G+F VI+DE C+ N K CTT + F+
Sbjct: 656 GQFLSVINDELSQIKEACHSLSPKYNPKILVCTTQKRHHARFFI 699
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,410
Number of Sequences: 5004
Number of extensions: 56246
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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