Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30123.Seq
(694 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein. 49 2e-07
AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein. 49 2e-07
AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein. 49 2e-07
AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein. 49 2e-07
U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles ... 27 0.42
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos... 25 2.3
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh... 24 5.2
DQ974174-1|ABJ52814.1| 391|Anopheles gambiae serpin 18 protein. 23 6.9
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi... 23 6.9
AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein p... 23 6.9
M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein. 23 9.1
>AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 48.8 bits (111), Expect = 2e-07
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +2
Query: 509 DCLQVFRCHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ +++IREEYPDRI+ T+SV PSP+VSD
Sbjct: 24 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSD 73
Score = 36.7 bits (81), Expect = 7e-04
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +3
Query: 441 HYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTELY 620
HYTEG E++++ LDV+R+E E + +T + + + P +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 621 *PFQSFQVPECRICVVEPYNTTL 689
+ P+ VVEPYN TL
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATL 83
>AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 48.8 bits (111), Expect = 2e-07
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +2
Query: 509 DCLQVFRCHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ +++IREEYPDRI+ T+SV PSP+VSD
Sbjct: 24 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSD 73
Score = 36.7 bits (81), Expect = 7e-04
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +3
Query: 441 HYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTELY 620
HYTEG E++++ LDV+R+E E + +T + + + P +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 621 *PFQSFQVPECRICVVEPYNTTL 689
+ P+ VVEPYN TL
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATL 83
>AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 48.8 bits (111), Expect = 2e-07
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +2
Query: 509 DCLQVFRCHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ +++IREEYPDRI+ T+SV PSP+VSD
Sbjct: 24 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSD 73
Score = 36.7 bits (81), Expect = 7e-04
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +3
Query: 441 HYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTELY 620
HYTEG E++++ LDV+R+E E + +T + + + P +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 621 *PFQSFQVPECRICVVEPYNTTL 689
+ P+ VVEPYN TL
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATL 83
>AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 48.8 bits (111), Expect = 2e-07
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +2
Query: 509 DCLQVFRCHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ +++IREEYPDRI+ T+SV PSP+VSD
Sbjct: 24 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSD 73
Score = 36.7 bits (81), Expect = 7e-04
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +3
Query: 441 HYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTELY 620
HYTEG E++++ LDV+R+E E + +T + + + P +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 621 *PFQSFQVPECRICVVEPYNTTL 689
+ P+ VVEPYN TL
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATL 83
>U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles
gambiae putativetubulin alpha chain mRNA, complete cds.
).
Length = 91
Score = 27.5 bits (58), Expect = 0.42
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWE 195
MRE I++ VG G QIG W+
Sbjct: 1 MRECISVHVGQAGVQIGNPCWD 22
>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
polyprotein protein.
Length = 1726
Score = 25.0 bits (52), Expect = 2.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +2
Query: 458 RDSGVCFRCHSKGS*GLDCLQVFRC 532
R G+CF C KG +C + C
Sbjct: 372 RKHGLCFNCLRKGHSARECRSTYVC 396
>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
cell-adhesion protein protein.
Length = 1881
Score = 23.8 bits (49), Expect = 5.2
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 308 SSHGSYRLEAGHDGRGEVG--TLRMPIQTGQFRLRTKLCGQQLGEGTLH 448
++H +YR++ G DGR +G T + I G L LG G+ +
Sbjct: 774 NNHVTYRIQQGGDGRFVIGASTGEISITHGASLDPNLLAPDALGSGSTY 822
>DQ974174-1|ABJ52814.1| 391|Anopheles gambiae serpin 18 protein.
Length = 391
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 199 SPPRTFRRFGFHKNRP 152
+PP T F FH NRP
Sbjct: 347 APPDTPSEFEFHANRP 362
>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
topoisomerase protein.
Length = 1039
Score = 23.4 bits (48), Expect = 6.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 372 GCLFRPDNFVYGQ 410
GC +RP NF YG+
Sbjct: 254 GCPWRPPNFKYGR 266
>AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein
protein.
Length = 541
Score = 23.4 bits (48), Expect = 6.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 470 VCFRCHSKGS*GLDCLQVFRC 532
+C RC S+G DC +C
Sbjct: 499 LCIRCGSEGHKARDCSSYVKC 519
>M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein.
Length = 613
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 470 VCFRCHSKGS*GLDCLQVFRC 532
VC RC +G C++ RC
Sbjct: 573 VCIRCGQEGHKAGTCMEEIRC 593
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,657
Number of Sequences: 2352
Number of extensions: 15073
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -