Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30123.Seq
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 150 7e-37
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 150 7e-37
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 150 7e-37
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 149 2e-36
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 149 2e-36
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 148 4e-36
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 147 5e-36
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 146 9e-36
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 146 9e-36
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 87 1e-17
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 87 1e-17
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 87 1e-17
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 87 1e-17
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 87 1e-17
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 87 1e-17
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 84 1e-16
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 60 1e-09
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 60 1e-09
At4g37190.1 68417.m05265 expressed protein 30 1.3
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 29 3.9
At5g62120.1 68418.m07797 hypothetical protein 28 5.1
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta... 28 6.8
At3g31910.1 68416.m04037 hypothetical protein 28 6.8
At5g64790.1 68418.m08146 glycosyl hydrolase family 17 protein si... 27 8.9
At5g37175.1 68418.m04463 hypothetical protein 27 8.9
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 150 bits (364), Expect = 7e-37
Identities = 75/145 (51%), Positives = 94/145 (64%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
QLERINVY+NEAS GKYVPR VL+DL+P TMD++RSGPFG +FRPDNFV+GQ+ A NNWA
Sbjct: 43 QLERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWA 102
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E+++S LDV+R+EAE + V + + + P
Sbjct: 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F F P+ VVEPYN TL
Sbjct: 163 MMMTFSVFPSPKVSDTVVEPYNATL 187
Score = 64.9 bits (151), Expect = 5e-11
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDL 255
MREI+++Q G CGNQIG KFWEVI EHGID +G GD+DL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL 42
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 DCLQVFR-CHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ CH+ +++IREEYPDR+++TFSVFPSP+VSD
Sbjct: 128 DCLQGFQVCHS-LGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 177
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 150 bits (364), Expect = 7e-37
Identities = 74/145 (51%), Positives = 94/145 (64%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
QLER+NVYYNEAS G+YVPR VL+DL+P TMD+VRSGP+G +FRPDNFV+GQ+ A NNWA
Sbjct: 43 QLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWA 102
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E+++S LDV+R+EAE + V + + + P
Sbjct: 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F F P+ VVEPYN TL
Sbjct: 163 MMMTFSVFPSPKVSDTVVEPYNATL 187
Score = 67.3 bits (157), Expect = 9e-12
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDL 255
MREI+++Q G CGNQIG KFWEV++ EHGID +G Y GDS+L
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL 42
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 DCLQVFR-CHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ CH+ +++IREEYPDR+++TFSVFPSP+VSD
Sbjct: 128 DCLQGFQVCHS-LGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 177
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 150 bits (364), Expect = 7e-37
Identities = 74/145 (51%), Positives = 94/145 (64%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
QLERINVYYNEAS G+YVPR VL+DL+P TMD++RSGPFG +FRPDNFV+GQ+ A NNWA
Sbjct: 44 QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWA 103
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E++++ LDV+R+EAE + V + + + P
Sbjct: 104 KGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 163
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F F P+ VVEPYN TL
Sbjct: 164 MMLTFSVFPSPKVSDTVVEPYNATL 188
Score = 68.1 bits (159), Expect = 5e-12
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDS 249
MREI+++Q G CGNQIG KFWEVI DEHGID +G Y GD+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDT 40
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 DCLQVFR-CHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ CH+ +++IREEYPDR++LTFSVFPSP+VSD
Sbjct: 129 DCLQGFQVCHS-LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 178
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 149 bits (361), Expect = 2e-36
Identities = 73/145 (50%), Positives = 94/145 (64%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
QLERINVYYNEAS G+YVPR VL+DL+P TMD++RSGP+G +FRPDNFV+GQ+ A NNWA
Sbjct: 44 QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWA 103
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E++++ LDV+R+EAE + V + + + P
Sbjct: 104 KGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 163
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F F P+ VVEPYN TL
Sbjct: 164 MMLTFSVFPSPKVSDTVVEPYNATL 188
Score = 72.5 bits (170), Expect = 2e-13
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDS 249
MREI+++Q G CGNQIG KFWEVI DEHG+DP+G Y+GDS
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDS 40
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 DCLQVFR-CHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ CH+ +++IREEYPDR++LTFSVFPSP+VSD
Sbjct: 129 DCLQGFQVCHS-LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 178
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 149 bits (360), Expect = 2e-36
Identities = 73/145 (50%), Positives = 94/145 (64%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
QLER+NVYYNEAS G++VPR VL+DL+P TMD+VRSGP+G +FRPDNFV+GQ+ A NNWA
Sbjct: 43 QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWA 102
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E+++S LDV+R+EAE + V + + + P
Sbjct: 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F F P+ VVEPYN TL
Sbjct: 163 MMLTFSVFPSPKVSDTVVEPYNATL 187
Score = 67.3 bits (157), Expect = 9e-12
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDL 255
MREI+++Q G CGNQIG KFWEV+ EHGID +G Y G++DL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL 42
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 DCLQVFR-CHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ CH+ +++IREEYPDR++LTFSVFPSP+VSD
Sbjct: 128 DCLQGFQVCHS-LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 148 bits (358), Expect = 4e-36
Identities = 74/145 (51%), Positives = 94/145 (64%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
QLERI+VY+NEAS GKYVPR VL+DL+P TMD++RSGPFG +FRPDNFV+GQ+ A NNWA
Sbjct: 43 QLERIDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWA 102
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E+++S LDV+R+EAE + V + + + P
Sbjct: 103 KGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F F P+ VVEPYN TL
Sbjct: 163 MMMTFSVFPSPKVSDTVVEPYNATL 187
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDL 255
MREI+++Q G CGNQIG KFWEVI DEHGID +G Y GDS L
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL 42
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 DCLQVFR-CHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ CH+ +++IREEYPDR+++TFSVFPSP+VSD
Sbjct: 128 DCLQGFQVCHS-LGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 177
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 147 bits (357), Expect = 5e-36
Identities = 71/145 (48%), Positives = 94/145 (64%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
QLER+NVYYNEAS G+YVPR +L+DL+P TMD+VR+GP+G +FRPDNFV+GQ+ A NNWA
Sbjct: 43 QLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWA 102
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E++++ LDV+R+EAE + V + + + P
Sbjct: 103 KGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F F P+ VVEPYN TL
Sbjct: 163 MMLTFSVFPSPKVSDTVVEPYNATL 187
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDL 255
MREI+++Q G CGNQIG KFWEV+ DEHGIDP+G Y G+SDL
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDL 42
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 DCLQVFR-CHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ CH+ +++IREEYPDR++LTFSVFPSP+VSD
Sbjct: 128 DCLQGFQVCHS-LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 146 bits (355), Expect = 9e-36
Identities = 73/145 (50%), Positives = 93/145 (64%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
QLERINVYYNEAS G++VPR VL+DL+P TMD++RSGP+G FRPDNFV+GQ+ A NNWA
Sbjct: 43 QLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWA 102
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E+++S LDV+R+EAE + V + + + P
Sbjct: 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F F P+ VVEPYN TL
Sbjct: 163 MMLTFSVFPSPKVSDTVVEPYNATL 187
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDL 255
MREI+++Q G CGNQIG KFWEV+ EHGIDP+G Y GDSDL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL 42
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 DCLQVFR-CHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ CH+ +++IREEYPDR++LTFSVFPSP+VSD
Sbjct: 128 DCLQGFQVCHS-LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 146 bits (355), Expect = 9e-36
Identities = 73/145 (50%), Positives = 93/145 (64%)
Frame = +3
Query: 255 QLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWA 434
QLERINVYYNEAS G++VPR VL+DL+P TMD++RSGP+G FRPDNFV+GQ+ A NNWA
Sbjct: 43 QLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWA 102
Query: 435 KGHYTEGVEILESALDVIRREAEGWIACKFSDVTLARWRYRFRIRYATS*TGYAKSIPTE 614
KGHYTEG E+++S LDV+R+EAE + V + + + P
Sbjct: 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162
Query: 615 LY*PFQSFQVPECRICVVEPYNTTL 689
+ F F P+ VVEPYN TL
Sbjct: 163 MMLTFSVFPSPKVSDTVVEPYNATL 187
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDL 255
MREI+++Q G CGNQIG KFWEV+ EHGIDP+G Y GDSDL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL 42
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 DCLQVFR-CHTRXXXXXXXXXXRYFVNRIREEYPDRIILTFSVFPSPRVSD 658
DCLQ F+ CH+ +++IREEYPDR++LTFSVFPSP+VSD
Sbjct: 128 DCLQGFQVCHS-LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 86.6 bits (205), Expect = 1e-17
Identities = 36/81 (44%), Positives = 56/81 (69%)
Frame = +3
Query: 261 ERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKG 440
+ N +++E AGK+VPR V +DL+P +D VR+G + LF P+ + G+ AANN+A+G
Sbjct: 47 DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
Query: 441 HYTEGVEILESALDVIRREAE 503
HYT G EI++ LD +R+ A+
Sbjct: 107 HYTVGKEIVDLCLDRVRKLAD 127
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDS 249
MREII++ +G G Q+G WE+ EHGI P G D+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDT 40
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 86.6 bits (205), Expect = 1e-17
Identities = 36/81 (44%), Positives = 56/81 (69%)
Frame = +3
Query: 261 ERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKG 440
+ N +++E AGK+VPR V +DL+P +D VR+G + LF P+ + G+ AANN+A+G
Sbjct: 47 DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
Query: 441 HYTEGVEILESALDVIRREAE 503
HYT G EI++ LD +R+ A+
Sbjct: 107 HYTVGKEIVDLCLDRVRKLAD 127
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDS 249
MREII++ +G G Q+G WE+ EHGI P G D+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDT 40
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/81 (45%), Positives = 56/81 (69%)
Frame = +3
Query: 261 ERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKG 440
+ N +++E AGK+VPR V +DL+P +D VR+G + LF P+ + G+ AANN+A+G
Sbjct: 47 DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
Query: 441 HYTEGVEILESALDVIRREAE 503
HYT G EI++ LD IR+ A+
Sbjct: 107 HYTIGKEIVDLCLDRIRKLAD 127
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGD 246
MRE I++ +G G Q+G WE+ EHGI P G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/81 (45%), Positives = 56/81 (69%)
Frame = +3
Query: 261 ERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKG 440
+ N +++E AGK+VPR V +DL+P +D VR+G + LF P+ + G+ AANN+A+G
Sbjct: 47 DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
Query: 441 HYTEGVEILESALDVIRREAE 503
HYT G EI++ LD IR+ A+
Sbjct: 107 HYTIGKEIVDLCLDRIRKLAD 127
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGD 246
MRE I++ +G G Q+G WE+ EHGI P G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/81 (45%), Positives = 56/81 (69%)
Frame = +3
Query: 261 ERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKG 440
+ N +++E AGK+VPR V +DL+P +D VR+G + LF P+ + G+ AANN+A+G
Sbjct: 47 DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
Query: 441 HYTEGVEILESALDVIRREAE 503
HYT G EI++ LD IR+ A+
Sbjct: 107 HYTIGKEIVDLCLDRIRKLAD 127
Score = 40.7 bits (91), Expect = 9e-04
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSG 231
MRE I++ +G G Q+G WE+ EHGI P G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG 34
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/81 (45%), Positives = 56/81 (69%)
Frame = +3
Query: 261 ERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKG 440
+ N +++E AGK+VPR V +DL+P +D VR+G + LF P+ + G+ AANN+A+G
Sbjct: 47 DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
Query: 441 HYTEGVEILESALDVIRREAE 503
HYT G EI++ LD IR+ A+
Sbjct: 107 HYTIGKEIVDLCLDRIRKLAD 127
Score = 40.7 bits (91), Expect = 9e-04
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSG 231
MRE I++ +G G Q+G WE+ EHGI P G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG 34
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 83.8 bits (198), Expect = 1e-16
Identities = 34/81 (41%), Positives = 58/81 (71%)
Frame = +3
Query: 261 ERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKG 440
+ N +++E S+G++VPR V +DL+P +D VR+G + LF P+ + G+ AANN+A+G
Sbjct: 47 DAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
Query: 441 HYTEGVEILESALDVIRREAE 503
HYT G EI+++ L+ +R+ A+
Sbjct: 107 HYTVGREIVDTCLERLRKLAD 127
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDLNS 261
MREII++ +G G Q+G WE+ EHGI P G DS + +
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGA 44
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +3
Query: 261 ERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQN--CAANNWA 434
+R +V++ +A Y+PR +LIDL+P ++ +++G + L+ +N + A NNWA
Sbjct: 46 DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWA 105
Query: 435 KGHYTEGVEILESALDVIRREAEG 506
G Y +G + E +D+I REA+G
Sbjct: 106 SG-YHQGKGVEEEIMDMIDREADG 128
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +1
Query: 133 REIINLQVGSCGNQIGGKFWEVISDEHGIDPSG 231
REII LQVG CGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +3
Query: 261 ERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQN--CAANNWA 434
+R +V++ +A Y+PR +LIDL+P ++ +++G + L+ +N + A NNWA
Sbjct: 46 DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWA 105
Query: 435 KGHYTEGVEILESALDVIRREAEG 506
G Y +G + E +D+I REA+G
Sbjct: 106 SG-YHQGKGVEEEIMDMIDREADG 128
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +1
Query: 133 REIINLQVGSCGNQIGGKFWEVISDEHGIDPSG 231
REII LQVG CGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 130 MREIINLQVGSCGNQIGGKFW 192
MREI+ +QVG N +G FW
Sbjct: 1 MREIVTIQVGEFANFVGSHFW 21
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 182 ESSGR*YLTSTASIQADATTATPTSTRKDQRVLQRG 289
ESSG +T+ +IQAD T +K QR++ G
Sbjct: 77 ESSGSVLVTAIRAIQADVTLTEAEKAKKRQRLMSGG 112
>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 417 AANNWAKGHYTEGVEILESALDVIRREAEGWI 512
A ++ AKG+Y E ++ILE + + R + W+
Sbjct: 16 ANDHIAKGNYIEALKILEDLIRIHREDQNAWL 47
>At5g62120.1 68418.m07797 hypothetical protein
Length = 145
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 222 IDAVLVRYHLPELSADLVSTRTDLEIDNFP 133
ID V+ YH+P L+ + R D E N P
Sbjct: 19 IDVVITDYHMPGLNGVQLKKRIDEEFGNLP 48
>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
BTB/POZ domain, INTERPRO:IPR000210
Length = 517
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +3
Query: 207 RARHRSKRMLPRRLRPQLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFR 386
RA S L +L+ + + ++ S + R ++ + MD+ RS F C+ +
Sbjct: 360 RAAMNSTSSRIESLEKELDTMKRFLSKESEKQKSDRNIVESRSRSVMDSARSASFHCVHQ 419
Query: 387 PDN 395
P N
Sbjct: 420 PSN 422
>At3g31910.1 68416.m04037 hypothetical protein
Length = 399
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 689 QRCV----IWLHHTNPTLGDLERLKRSV*FCRDTLRVSCSR 579
QRCV IW++ + P LG++ +KR + C L + SR
Sbjct: 173 QRCVHALVIWIYESVPGLGEIYGMKRDILTCIPLLDWNSSR 213
>At5g64790.1 68418.m08146 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 485
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 205 DEHGIDPS-GCYHGDSDLNSKGSTCT 279
DE G D CYHGD GSTC+
Sbjct: 380 DEVGPDLDYACYHGDCTAMEAGSTCS 405
>At5g37175.1 68418.m04463 hypothetical protein
Length = 136
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 236 TTATPTSTRKDQRVLQRGIGWEICSSHGSYRLE 334
TT+T + RK++ G GW + HG+ LE
Sbjct: 6 TTSTMSGRRKEEENGNPGFGWVLKDPHGTTLLE 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,827,039
Number of Sequences: 28952
Number of extensions: 305926
Number of successful extensions: 937
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -